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r84028_20230214_022129.tar 2023-02-22 23:50 15G
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README.txt 2023-07-23 15:50 35K
OVERVIEW
Example file layout for a run on the Revio sytem with 8 SMRT Cells.
BAM files are truncated to reduce file size.
LAYOUT
r84028_20230214_022129
├── 1_A01
│ ├── Transfer_Test_230214_022138.txt
│ ├── fail_reads
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2023.bam
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2023.bam.pbi
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2024.bam
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2024.bam.pbi
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2025.bam
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2025.bam.pbi
│ │ ├── m84028_230214_023007_s1.fail_reads.unassigned.bam
│ │ └── m84028_230214_023007_s1.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2023.bam
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2023.bam.pbi
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2024.bam
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2024.bam.pbi
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2025.bam
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2025.bam.pbi
│ │ ├── m84028_230214_023007_s1.hifi_reads.unassigned.bam
│ │ └── m84028_230214_023007_s1.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230214_023007_s1.barcodes.fasta
│ │ ├── m84028_230214_023007_s1.basecaller.log
│ │ ├── m84028_230214_023007_s1.baz2bam.log
│ │ ├── m84028_230214_023007_s1.canary
│ │ ├── m84028_230214_023007_s1.ccs.log
│ │ ├── m84028_230214_023007_s1.darkcal.log
│ │ ├── m84028_230214_023007_s1.fail_reads.lima.log
│ │ ├── m84028_230214_023007_s1.fail_reads.primrose.log
│ │ ├── m84028_230214_023007_s1.hifi_reads.lima.log
│ │ ├── m84028_230214_023007_s1.hifi_reads.primrose.log
│ │ ├── m84028_230214_023007_s1.metadata.xml
│ │ ├── m84028_230214_023007_s1.nrt_find.txt
│ │ ├── m84028_230214_023007_s1.sts.xml
│ │ ├── m84028_230214_023007_s1.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2023.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2024.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.fail_reads.bc2025.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.fail_reads.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.fail_reads.json
│ │ ├── m84028_230214_023007_s1.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2023.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2024.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.hifi_reads.bc2025.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230214_023007_s1.hifi_reads.json
│ │ └── m84028_230214_023007_s1.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230214_023007_s1.ccs_report.json
│ ├── m84028_230214_023007_s1.ccs_report.txt
│ ├── m84028_230214_023007_s1.fail_reads.5mc_report.json
│ ├── m84028_230214_023007_s1.fail_reads.lima_counts.txt
│ ├── m84028_230214_023007_s1.fail_reads.lima_report.txt
│ ├── m84028_230214_023007_s1.fail_reads.lima_summary.txt
│ ├── m84028_230214_023007_s1.fail_reads.unassigned.json
│ ├── m84028_230214_023007_s1.hifi_reads.5mc_report.json
│ ├── m84028_230214_023007_s1.hifi_reads.lima_counts.txt
│ ├── m84028_230214_023007_s1.hifi_reads.lima_report.txt
│ ├── m84028_230214_023007_s1.hifi_reads.lima_summary.txt
│ ├── m84028_230214_023007_s1.hifi_reads.unassigned.json
│ ├── m84028_230214_023007_s1.summary.json
│ ├── m84028_230214_023007_s1.zmw_metrics.csv.gz
│ └── m84028_230214_023007_s1.zmw_metrics.json.gz
├── 1_B01
│ ├── Transfer_Test_230214_022138.txt
│ ├── fail_reads
│ │ ├── m84028_230214_030031_s2.fail_reads.bc2001.bam
│ │ ├── m84028_230214_030031_s2.fail_reads.bc2001.bam.pbi
│ │ ├── m84028_230214_030031_s2.fail_reads.bc2002.bam
│ │ ├── m84028_230214_030031_s2.fail_reads.bc2002.bam.pbi
│ │ ├── m84028_230214_030031_s2.fail_reads.unassigned.bam
│ │ └── m84028_230214_030031_s2.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230214_030031_s2.hifi_reads.bc2001.bam
│ │ ├── m84028_230214_030031_s2.hifi_reads.bc2001.bam.pbi
│ │ ├── m84028_230214_030031_s2.hifi_reads.bc2002.bam
│ │ ├── m84028_230214_030031_s2.hifi_reads.bc2002.bam.pbi
│ │ ├── m84028_230214_030031_s2.hifi_reads.unassigned.bam
│ │ └── m84028_230214_030031_s2.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230214_030031_s2.barcodes.fasta
│ │ ├── m84028_230214_030031_s2.basecaller.log
│ │ ├── m84028_230214_030031_s2.baz2bam.log
│ │ ├── m84028_230214_030031_s2.canary
│ │ ├── m84028_230214_030031_s2.ccs.log
│ │ ├── m84028_230214_030031_s2.darkcal.log
│ │ ├── m84028_230214_030031_s2.fail_reads.lima.log
│ │ ├── m84028_230214_030031_s2.fail_reads.primrose.log
│ │ ├── m84028_230214_030031_s2.hifi_reads.lima.log
│ │ ├── m84028_230214_030031_s2.hifi_reads.primrose.log
│ │ ├── m84028_230214_030031_s2.metadata.xml
│ │ ├── m84028_230214_030031_s2.nrt_find.txt
│ │ ├── m84028_230214_030031_s2.sts.xml
│ │ ├── m84028_230214_030031_s2.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230214_030031_s2.fail_reads.bc2001.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.fail_reads.bc2002.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.fail_reads.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.fail_reads.json
│ │ ├── m84028_230214_030031_s2.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.hifi_reads.bc2001.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.hifi_reads.bc2002.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230214_030031_s2.hifi_reads.json
│ │ └── m84028_230214_030031_s2.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230214_030031_s2.ccs_report.json
│ ├── m84028_230214_030031_s2.ccs_report.txt
│ ├── m84028_230214_030031_s2.fail_reads.5mc_report.json
│ ├── m84028_230214_030031_s2.fail_reads.lima_counts.txt
│ ├── m84028_230214_030031_s2.fail_reads.lima_report.txt
│ ├── m84028_230214_030031_s2.fail_reads.lima_summary.txt
│ ├── m84028_230214_030031_s2.fail_reads.unassigned.json
│ ├── m84028_230214_030031_s2.hifi_reads.5mc_report.json
│ ├── m84028_230214_030031_s2.hifi_reads.lima_counts.txt
│ ├── m84028_230214_030031_s2.hifi_reads.lima_report.txt
│ ├── m84028_230214_030031_s2.hifi_reads.lima_summary.txt
│ ├── m84028_230214_030031_s2.hifi_reads.unassigned.json
│ ├── m84028_230214_030031_s2.summary.json
│ ├── m84028_230214_030031_s2.zmw_metrics.csv.gz
│ └── m84028_230214_030031_s2.zmw_metrics.json.gz
├── 1_C01
│ ├── Transfer_Test_230214_022138.txt
│ ├── fail_reads
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2026.bam
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2026.bam.pbi
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2027.bam
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2027.bam.pbi
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2028.bam
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2028.bam.pbi
│ │ ├── m84028_230214_033138_s3.fail_reads.unassigned.bam
│ │ └── m84028_230214_033138_s3.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2026.bam
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2026.bam.pbi
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2027.bam
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2027.bam.pbi
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2028.bam
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2028.bam.pbi
│ │ ├── m84028_230214_033138_s3.hifi_reads.unassigned.bam
│ │ └── m84028_230214_033138_s3.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230214_033138_s3.barcodes.fasta
│ │ ├── m84028_230214_033138_s3.basecaller.log
│ │ ├── m84028_230214_033138_s3.baz2bam.log
│ │ ├── m84028_230214_033138_s3.canary
│ │ ├── m84028_230214_033138_s3.ccs.log
│ │ ├── m84028_230214_033138_s3.darkcal.log
│ │ ├── m84028_230214_033138_s3.fail_reads.lima.log
│ │ ├── m84028_230214_033138_s3.fail_reads.primrose.log
│ │ ├── m84028_230214_033138_s3.hifi_reads.lima.log
│ │ ├── m84028_230214_033138_s3.hifi_reads.primrose.log
│ │ ├── m84028_230214_033138_s3.metadata.xml
│ │ ├── m84028_230214_033138_s3.nrt_find.txt
│ │ ├── m84028_230214_033138_s3.sts.xml
│ │ ├── m84028_230214_033138_s3.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2026.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2027.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.fail_reads.bc2028.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.fail_reads.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.fail_reads.json
│ │ ├── m84028_230214_033138_s3.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2026.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2027.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.hifi_reads.bc2028.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230214_033138_s3.hifi_reads.json
│ │ └── m84028_230214_033138_s3.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230214_033138_s3.ccs_report.json
│ ├── m84028_230214_033138_s3.ccs_report.txt
│ ├── m84028_230214_033138_s3.fail_reads.5mc_report.json
│ ├── m84028_230214_033138_s3.fail_reads.lima_counts.txt
│ ├── m84028_230214_033138_s3.fail_reads.lima_report.txt
│ ├── m84028_230214_033138_s3.fail_reads.lima_summary.txt
│ ├── m84028_230214_033138_s3.fail_reads.unassigned.json
│ ├── m84028_230214_033138_s3.hifi_reads.5mc_report.json
│ ├── m84028_230214_033138_s3.hifi_reads.lima_counts.txt
│ ├── m84028_230214_033138_s3.hifi_reads.lima_report.txt
│ ├── m84028_230214_033138_s3.hifi_reads.lima_summary.txt
│ ├── m84028_230214_033138_s3.hifi_reads.unassigned.json
│ ├── m84028_230214_033138_s3.summary.json
│ ├── m84028_230214_033138_s3.zmw_metrics.csv.gz
│ └── m84028_230214_033138_s3.zmw_metrics.json.gz
├── 1_D01
│ ├── Transfer_Test_230214_022139.txt
│ ├── fail_reads
│ │ ├── m84028_230214_040244_s4.fail_reads.bc2003.bam
│ │ ├── m84028_230214_040244_s4.fail_reads.bc2003.bam.pbi
│ │ ├── m84028_230214_040244_s4.fail_reads.bc2004.bam
│ │ ├── m84028_230214_040244_s4.fail_reads.bc2004.bam.pbi
│ │ ├── m84028_230214_040244_s4.fail_reads.unassigned.bam
│ │ └── m84028_230214_040244_s4.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230214_040244_s4.hifi_reads.bc2003.bam
│ │ ├── m84028_230214_040244_s4.hifi_reads.bc2003.bam.pbi
│ │ ├── m84028_230214_040244_s4.hifi_reads.bc2004.bam
│ │ ├── m84028_230214_040244_s4.hifi_reads.bc2004.bam.pbi
│ │ ├── m84028_230214_040244_s4.hifi_reads.unassigned.bam
│ │ └── m84028_230214_040244_s4.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230214_040244_s4.barcodes.fasta
│ │ ├── m84028_230214_040244_s4.basecaller.log
│ │ ├── m84028_230214_040244_s4.baz2bam.log
│ │ ├── m84028_230214_040244_s4.canary
│ │ ├── m84028_230214_040244_s4.ccs.log
│ │ ├── m84028_230214_040244_s4.darkcal.log
│ │ ├── m84028_230214_040244_s4.fail_reads.lima.log
│ │ ├── m84028_230214_040244_s4.fail_reads.primrose.log
│ │ ├── m84028_230214_040244_s4.hifi_reads.lima.log
│ │ ├── m84028_230214_040244_s4.hifi_reads.primrose.log
│ │ ├── m84028_230214_040244_s4.metadata.xml
│ │ ├── m84028_230214_040244_s4.nrt_find.txt
│ │ ├── m84028_230214_040244_s4.sts.xml
│ │ ├── m84028_230214_040244_s4.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230214_040244_s4.fail_reads.bc2003.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.fail_reads.bc2004.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.fail_reads.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.fail_reads.json
│ │ ├── m84028_230214_040244_s4.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.hifi_reads.bc2003.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.hifi_reads.bc2004.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230214_040244_s4.hifi_reads.json
│ │ └── m84028_230214_040244_s4.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230214_040244_s4.ccs_report.json
│ ├── m84028_230214_040244_s4.ccs_report.txt
│ ├── m84028_230214_040244_s4.fail_reads.5mc_report.json
│ ├── m84028_230214_040244_s4.fail_reads.lima_counts.txt
│ ├── m84028_230214_040244_s4.fail_reads.lima_report.txt
│ ├── m84028_230214_040244_s4.fail_reads.lima_summary.txt
│ ├── m84028_230214_040244_s4.fail_reads.unassigned.json
│ ├── m84028_230214_040244_s4.hifi_reads.5mc_report.json
│ ├── m84028_230214_040244_s4.hifi_reads.lima_counts.txt
│ ├── m84028_230214_040244_s4.hifi_reads.lima_report.txt
│ ├── m84028_230214_040244_s4.hifi_reads.lima_summary.txt
│ ├── m84028_230214_040244_s4.hifi_reads.unassigned.json
│ ├── m84028_230214_040244_s4.summary.json
│ ├── m84028_230214_040244_s4.zmw_metrics.csv.gz
│ └── m84028_230214_040244_s4.zmw_metrics.json.gz
├── 2_A01
│ ├── Transfer_Test_230214_022139.txt
│ ├── fail_reads
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2040.bam
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2040.bam.pbi
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2041.bam
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2041.bam.pbi
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2042.bam
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2042.bam.pbi
│ │ ├── m84028_230215_023958_s1.fail_reads.unassigned.bam
│ │ └── m84028_230215_023958_s1.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2040.bam
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2040.bam.pbi
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2041.bam
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2041.bam.pbi
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2042.bam
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2042.bam.pbi
│ │ ├── m84028_230215_023958_s1.hifi_reads.unassigned.bam
│ │ └── m84028_230215_023958_s1.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230215_023958_s1.barcodes.fasta
│ │ ├── m84028_230215_023958_s1.basecaller.log
│ │ ├── m84028_230215_023958_s1.baz2bam.log
│ │ ├── m84028_230215_023958_s1.canary
│ │ ├── m84028_230215_023958_s1.ccs.log
│ │ ├── m84028_230215_023958_s1.darkcal.log
│ │ ├── m84028_230215_023958_s1.fail_reads.lima.log
│ │ ├── m84028_230215_023958_s1.fail_reads.primrose.log
│ │ ├── m84028_230215_023958_s1.hifi_reads.lima.log
│ │ ├── m84028_230215_023958_s1.hifi_reads.primrose.log
│ │ ├── m84028_230215_023958_s1.metadata.xml
│ │ ├── m84028_230215_023958_s1.nrt_find.txt
│ │ ├── m84028_230215_023958_s1.sts.xml
│ │ ├── m84028_230215_023958_s1.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2040.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2041.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.fail_reads.bc2042.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.fail_reads.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.fail_reads.json
│ │ ├── m84028_230215_023958_s1.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2040.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2041.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.hifi_reads.bc2042.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230215_023958_s1.hifi_reads.json
│ │ └── m84028_230215_023958_s1.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230215_023958_s1.ccs_report.json
│ ├── m84028_230215_023958_s1.ccs_report.txt
│ ├── m84028_230215_023958_s1.fail_reads.5mc_report.json
│ ├── m84028_230215_023958_s1.fail_reads.lima_counts.txt
│ ├── m84028_230215_023958_s1.fail_reads.lima_report.txt
│ ├── m84028_230215_023958_s1.fail_reads.lima_summary.txt
│ ├── m84028_230215_023958_s1.fail_reads.unassigned.json
│ ├── m84028_230215_023958_s1.hifi_reads.5mc_report.json
│ ├── m84028_230215_023958_s1.hifi_reads.lima_counts.txt
│ ├── m84028_230215_023958_s1.hifi_reads.lima_report.txt
│ ├── m84028_230215_023958_s1.hifi_reads.lima_summary.txt
│ ├── m84028_230215_023958_s1.hifi_reads.unassigned.json
│ ├── m84028_230215_023958_s1.summary.json
│ ├── m84028_230215_023958_s1.zmw_metrics.csv.gz
│ └── m84028_230215_023958_s1.zmw_metrics.json.gz
├── 2_B01
│ ├── Transfer_Test_230214_022139.txt
│ ├── fail_reads
│ │ ├── m84028_230215_031104_s2.fail_reads.bc2005.bam
│ │ ├── m84028_230215_031104_s2.fail_reads.bc2005.bam.pbi
│ │ ├── m84028_230215_031104_s2.fail_reads.bc2006.bam
│ │ ├── m84028_230215_031104_s2.fail_reads.bc2006.bam.pbi
│ │ ├── m84028_230215_031104_s2.fail_reads.unassigned.bam
│ │ └── m84028_230215_031104_s2.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230215_031104_s2.hifi_reads.bc2005.bam
│ │ ├── m84028_230215_031104_s2.hifi_reads.bc2005.bam.pbi
│ │ ├── m84028_230215_031104_s2.hifi_reads.bc2006.bam
│ │ ├── m84028_230215_031104_s2.hifi_reads.bc2006.bam.pbi
│ │ ├── m84028_230215_031104_s2.hifi_reads.unassigned.bam
│ │ └── m84028_230215_031104_s2.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230215_031104_s2.barcodes.fasta
│ │ ├── m84028_230215_031104_s2.basecaller.log
│ │ ├── m84028_230215_031104_s2.baz2bam.log
│ │ ├── m84028_230215_031104_s2.canary
│ │ ├── m84028_230215_031104_s2.ccs.log
│ │ ├── m84028_230215_031104_s2.darkcal.log
│ │ ├── m84028_230215_031104_s2.fail_reads.lima.log
│ │ ├── m84028_230215_031104_s2.fail_reads.primrose.log
│ │ ├── m84028_230215_031104_s2.hifi_reads.lima.log
│ │ ├── m84028_230215_031104_s2.hifi_reads.primrose.log
│ │ ├── m84028_230215_031104_s2.metadata.xml
│ │ ├── m84028_230215_031104_s2.nrt_find.txt
│ │ ├── m84028_230215_031104_s2.sts.xml
│ │ ├── m84028_230215_031104_s2.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230215_031104_s2.fail_reads.bc2005.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.fail_reads.bc2006.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.fail_reads.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.fail_reads.json
│ │ ├── m84028_230215_031104_s2.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.hifi_reads.bc2005.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.hifi_reads.bc2006.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230215_031104_s2.hifi_reads.json
│ │ └── m84028_230215_031104_s2.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230215_031104_s2.ccs_report.json
│ ├── m84028_230215_031104_s2.ccs_report.txt
│ ├── m84028_230215_031104_s2.fail_reads.5mc_report.json
│ ├── m84028_230215_031104_s2.fail_reads.lima_counts.txt
│ ├── m84028_230215_031104_s2.fail_reads.lima_report.txt
│ ├── m84028_230215_031104_s2.fail_reads.lima_summary.txt
│ ├── m84028_230215_031104_s2.fail_reads.unassigned.json
│ ├── m84028_230215_031104_s2.hifi_reads.5mc_report.json
│ ├── m84028_230215_031104_s2.hifi_reads.lima_counts.txt
│ ├── m84028_230215_031104_s2.hifi_reads.lima_report.txt
│ ├── m84028_230215_031104_s2.hifi_reads.lima_summary.txt
│ ├── m84028_230215_031104_s2.hifi_reads.unassigned.json
│ ├── m84028_230215_031104_s2.summary.json
│ ├── m84028_230215_031104_s2.zmw_metrics.csv.gz
│ └── m84028_230215_031104_s2.zmw_metrics.json.gz
├── 2_C01
│ ├── Transfer_Test_230214_022139.txt
│ ├── fail_reads
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2043.bam
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2043.bam.pbi
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2044.bam
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2044.bam.pbi
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2045.bam
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2045.bam.pbi
│ │ ├── m84028_230215_034210_s3.fail_reads.unassigned.bam
│ │ └── m84028_230215_034210_s3.fail_reads.unassigned.bam.pbi
│ ├── hifi_reads
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2043.bam
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2043.bam.pbi
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2044.bam
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2044.bam.pbi
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2045.bam
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2045.bam.pbi
│ │ ├── m84028_230215_034210_s3.hifi_reads.unassigned.bam
│ │ └── m84028_230215_034210_s3.hifi_reads.unassigned.bam.pbi
│ ├── metadata
│ │ ├── m84028_230215_034210_s3.barcodes.fasta
│ │ ├── m84028_230215_034210_s3.basecaller.log
│ │ ├── m84028_230215_034210_s3.baz2bam.log
│ │ ├── m84028_230215_034210_s3.canary
│ │ ├── m84028_230215_034210_s3.ccs.log
│ │ ├── m84028_230215_034210_s3.darkcal.log
│ │ ├── m84028_230215_034210_s3.fail_reads.lima.log
│ │ ├── m84028_230215_034210_s3.fail_reads.primrose.log
│ │ ├── m84028_230215_034210_s3.hifi_reads.lima.log
│ │ ├── m84028_230215_034210_s3.hifi_reads.primrose.log
│ │ ├── m84028_230215_034210_s3.metadata.xml
│ │ ├── m84028_230215_034210_s3.nrt_find.txt
│ │ ├── m84028_230215_034210_s3.sts.xml
│ │ ├── m84028_230215_034210_s3.transferdone
│ │ └── nvidia-smi.log
│ ├── pb_formats
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2043.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2044.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.fail_reads.bc2045.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.fail_reads.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.fail_reads.json
│ │ ├── m84028_230215_034210_s3.fail_reads.unassigned.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2043.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2044.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.hifi_reads.bc2045.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.hifi_reads.consensusreadset.xml
│ │ ├── m84028_230215_034210_s3.hifi_reads.json
│ │ └── m84028_230215_034210_s3.hifi_reads.unassigned.consensusreadset.xml
│ └── statistics
│ ├── m84028_230215_034210_s3.ccs_report.json
│ ├── m84028_230215_034210_s3.ccs_report.txt
│ ├── m84028_230215_034210_s3.fail_reads.5mc_report.json
│ ├── m84028_230215_034210_s3.fail_reads.lima_counts.txt
│ ├── m84028_230215_034210_s3.fail_reads.lima_report.txt
│ ├── m84028_230215_034210_s3.fail_reads.lima_summary.txt
│ ├── m84028_230215_034210_s3.fail_reads.unassigned.json
│ ├── m84028_230215_034210_s3.hifi_reads.5mc_report.json
│ ├── m84028_230215_034210_s3.hifi_reads.lima_counts.txt
│ ├── m84028_230215_034210_s3.hifi_reads.lima_report.txt
│ ├── m84028_230215_034210_s3.hifi_reads.lima_summary.txt
│ ├── m84028_230215_034210_s3.hifi_reads.unassigned.json
│ ├── m84028_230215_034210_s3.summary.json
│ ├── m84028_230215_034210_s3.zmw_metrics.csv.gz
│ └── m84028_230215_034210_s3.zmw_metrics.json.gz
└── 2_D01
├── Transfer_Test_230214_022139.txt
├── fail_reads
│ ├── m84028_230215_041316_s4.fail_reads.bc2007.bam
│ ├── m84028_230215_041316_s4.fail_reads.bc2007.bam.pbi
│ ├── m84028_230215_041316_s4.fail_reads.bc2008.bam
│ ├── m84028_230215_041316_s4.fail_reads.bc2008.bam.pbi
│ ├── m84028_230215_041316_s4.fail_reads.unassigned.bam
│ └── m84028_230215_041316_s4.fail_reads.unassigned.bam.pbi
├── hifi_reads
│ ├── m84028_230215_041316_s4.hifi_reads.bc2007.bam
│ ├── m84028_230215_041316_s4.hifi_reads.bc2007.bam.pbi
│ ├── m84028_230215_041316_s4.hifi_reads.bc2008.bam
│ ├── m84028_230215_041316_s4.hifi_reads.bc2008.bam.pbi
│ ├── m84028_230215_041316_s4.hifi_reads.unassigned.bam
│ └── m84028_230215_041316_s4.hifi_reads.unassigned.bam.pbi
├── metadata
│ ├── m84028_230215_041316_s4.barcodes.fasta
│ ├── m84028_230215_041316_s4.basecaller.log
│ ├── m84028_230215_041316_s4.baz2bam.log
│ ├── m84028_230215_041316_s4.canary
│ ├── m84028_230215_041316_s4.ccs.log
│ ├── m84028_230215_041316_s4.darkcal.log
│ ├── m84028_230215_041316_s4.fail_reads.lima.log
│ ├── m84028_230215_041316_s4.fail_reads.primrose.log
│ ├── m84028_230215_041316_s4.hifi_reads.lima.log
│ ├── m84028_230215_041316_s4.hifi_reads.primrose.log
│ ├── m84028_230215_041316_s4.metadata.xml
│ ├── m84028_230215_041316_s4.nrt_find.txt
│ ├── m84028_230215_041316_s4.sts.xml
│ ├── m84028_230215_041316_s4.transferdone
│ └── nvidia-smi.log
├── pb_formats
│ ├── m84028_230215_041316_s4.fail_reads.bc2007.consensusreadset.xml
│ ├── m84028_230215_041316_s4.fail_reads.bc2008.consensusreadset.xml
│ ├── m84028_230215_041316_s4.fail_reads.consensusreadset.xml
│ ├── m84028_230215_041316_s4.fail_reads.json
│ ├── m84028_230215_041316_s4.fail_reads.unassigned.consensusreadset.xml
│ ├── m84028_230215_041316_s4.hifi_reads.bc2007.consensusreadset.xml
│ ├── m84028_230215_041316_s4.hifi_reads.bc2008.consensusreadset.xml
│ ├── m84028_230215_041316_s4.hifi_reads.consensusreadset.xml
│ ├── m84028_230215_041316_s4.hifi_reads.json
│ └── m84028_230215_041316_s4.hifi_reads.unassigned.consensusreadset.xml
└── statistics
├── m84028_230215_041316_s4.ccs_report.json
├── m84028_230215_041316_s4.ccs_report.txt
├── m84028_230215_041316_s4.fail_reads.5mc_report.json
├── m84028_230215_041316_s4.fail_reads.lima_counts.txt
├── m84028_230215_041316_s4.fail_reads.lima_report.txt
├── m84028_230215_041316_s4.fail_reads.lima_summary.txt
├── m84028_230215_041316_s4.fail_reads.unassigned.json
├── m84028_230215_041316_s4.hifi_reads.5mc_report.json
├── m84028_230215_041316_s4.hifi_reads.lima_counts.txt
├── m84028_230215_041316_s4.hifi_reads.lima_report.txt
├── m84028_230215_041316_s4.hifi_reads.lima_summary.txt
├── m84028_230215_041316_s4.hifi_reads.unassigned.json
├── m84028_230215_041316_s4.summary.json
├── m84028_230215_041316_s4.zmw_metrics.csv.gz
└── m84028_230215_041316_s4.zmw_metrics.json.gz
48 directories, 448 files