OVERVIEW
    Example file layout for a run on the Revio sytem with 8 SMRT Cells.
    BAM files are truncated to reduce file size.


LAYOUT
    r84028_20230214_022129
    ├── 1_A01
    │   ├── Transfer_Test_230214_022138.txt
    │   ├── fail_reads
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2023.bam
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2023.bam.pbi
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2024.bam
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2024.bam.pbi
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2025.bam
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2025.bam.pbi
    │   │   ├── m84028_230214_023007_s1.fail_reads.unassigned.bam
    │   │   └── m84028_230214_023007_s1.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2023.bam
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2023.bam.pbi
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2024.bam
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2024.bam.pbi
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2025.bam
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2025.bam.pbi
    │   │   ├── m84028_230214_023007_s1.hifi_reads.unassigned.bam
    │   │   └── m84028_230214_023007_s1.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230214_023007_s1.barcodes.fasta
    │   │   ├── m84028_230214_023007_s1.basecaller.log
    │   │   ├── m84028_230214_023007_s1.baz2bam.log
    │   │   ├── m84028_230214_023007_s1.canary
    │   │   ├── m84028_230214_023007_s1.ccs.log
    │   │   ├── m84028_230214_023007_s1.darkcal.log
    │   │   ├── m84028_230214_023007_s1.fail_reads.lima.log
    │   │   ├── m84028_230214_023007_s1.fail_reads.primrose.log
    │   │   ├── m84028_230214_023007_s1.hifi_reads.lima.log
    │   │   ├── m84028_230214_023007_s1.hifi_reads.primrose.log
    │   │   ├── m84028_230214_023007_s1.metadata.xml
    │   │   ├── m84028_230214_023007_s1.nrt_find.txt
    │   │   ├── m84028_230214_023007_s1.sts.xml
    │   │   ├── m84028_230214_023007_s1.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2023.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2024.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.fail_reads.bc2025.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.fail_reads.json
    │   │   ├── m84028_230214_023007_s1.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2023.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2024.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.hifi_reads.bc2025.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230214_023007_s1.hifi_reads.json
    │   │   └── m84028_230214_023007_s1.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230214_023007_s1.ccs_report.json
    │       ├── m84028_230214_023007_s1.ccs_report.txt
    │       ├── m84028_230214_023007_s1.fail_reads.5mc_report.json
    │       ├── m84028_230214_023007_s1.fail_reads.lima_counts.txt
    │       ├── m84028_230214_023007_s1.fail_reads.lima_report.txt
    │       ├── m84028_230214_023007_s1.fail_reads.lima_summary.txt
    │       ├── m84028_230214_023007_s1.fail_reads.unassigned.json
    │       ├── m84028_230214_023007_s1.hifi_reads.5mc_report.json
    │       ├── m84028_230214_023007_s1.hifi_reads.lima_counts.txt
    │       ├── m84028_230214_023007_s1.hifi_reads.lima_report.txt
    │       ├── m84028_230214_023007_s1.hifi_reads.lima_summary.txt
    │       ├── m84028_230214_023007_s1.hifi_reads.unassigned.json
    │       ├── m84028_230214_023007_s1.summary.json
    │       ├── m84028_230214_023007_s1.zmw_metrics.csv.gz
    │       └── m84028_230214_023007_s1.zmw_metrics.json.gz
    ├── 1_B01
    │   ├── Transfer_Test_230214_022138.txt
    │   ├── fail_reads
    │   │   ├── m84028_230214_030031_s2.fail_reads.bc2001.bam
    │   │   ├── m84028_230214_030031_s2.fail_reads.bc2001.bam.pbi
    │   │   ├── m84028_230214_030031_s2.fail_reads.bc2002.bam
    │   │   ├── m84028_230214_030031_s2.fail_reads.bc2002.bam.pbi
    │   │   ├── m84028_230214_030031_s2.fail_reads.unassigned.bam
    │   │   └── m84028_230214_030031_s2.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230214_030031_s2.hifi_reads.bc2001.bam
    │   │   ├── m84028_230214_030031_s2.hifi_reads.bc2001.bam.pbi
    │   │   ├── m84028_230214_030031_s2.hifi_reads.bc2002.bam
    │   │   ├── m84028_230214_030031_s2.hifi_reads.bc2002.bam.pbi
    │   │   ├── m84028_230214_030031_s2.hifi_reads.unassigned.bam
    │   │   └── m84028_230214_030031_s2.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230214_030031_s2.barcodes.fasta
    │   │   ├── m84028_230214_030031_s2.basecaller.log
    │   │   ├── m84028_230214_030031_s2.baz2bam.log
    │   │   ├── m84028_230214_030031_s2.canary
    │   │   ├── m84028_230214_030031_s2.ccs.log
    │   │   ├── m84028_230214_030031_s2.darkcal.log
    │   │   ├── m84028_230214_030031_s2.fail_reads.lima.log
    │   │   ├── m84028_230214_030031_s2.fail_reads.primrose.log
    │   │   ├── m84028_230214_030031_s2.hifi_reads.lima.log
    │   │   ├── m84028_230214_030031_s2.hifi_reads.primrose.log
    │   │   ├── m84028_230214_030031_s2.metadata.xml
    │   │   ├── m84028_230214_030031_s2.nrt_find.txt
    │   │   ├── m84028_230214_030031_s2.sts.xml
    │   │   ├── m84028_230214_030031_s2.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230214_030031_s2.fail_reads.bc2001.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.fail_reads.bc2002.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.fail_reads.json
    │   │   ├── m84028_230214_030031_s2.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.hifi_reads.bc2001.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.hifi_reads.bc2002.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230214_030031_s2.hifi_reads.json
    │   │   └── m84028_230214_030031_s2.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230214_030031_s2.ccs_report.json
    │       ├── m84028_230214_030031_s2.ccs_report.txt
    │       ├── m84028_230214_030031_s2.fail_reads.5mc_report.json
    │       ├── m84028_230214_030031_s2.fail_reads.lima_counts.txt
    │       ├── m84028_230214_030031_s2.fail_reads.lima_report.txt
    │       ├── m84028_230214_030031_s2.fail_reads.lima_summary.txt
    │       ├── m84028_230214_030031_s2.fail_reads.unassigned.json
    │       ├── m84028_230214_030031_s2.hifi_reads.5mc_report.json
    │       ├── m84028_230214_030031_s2.hifi_reads.lima_counts.txt
    │       ├── m84028_230214_030031_s2.hifi_reads.lima_report.txt
    │       ├── m84028_230214_030031_s2.hifi_reads.lima_summary.txt
    │       ├── m84028_230214_030031_s2.hifi_reads.unassigned.json
    │       ├── m84028_230214_030031_s2.summary.json
    │       ├── m84028_230214_030031_s2.zmw_metrics.csv.gz
    │       └── m84028_230214_030031_s2.zmw_metrics.json.gz
    ├── 1_C01
    │   ├── Transfer_Test_230214_022138.txt
    │   ├── fail_reads
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2026.bam
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2026.bam.pbi
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2027.bam
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2027.bam.pbi
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2028.bam
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2028.bam.pbi
    │   │   ├── m84028_230214_033138_s3.fail_reads.unassigned.bam
    │   │   └── m84028_230214_033138_s3.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2026.bam
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2026.bam.pbi
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2027.bam
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2027.bam.pbi
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2028.bam
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2028.bam.pbi
    │   │   ├── m84028_230214_033138_s3.hifi_reads.unassigned.bam
    │   │   └── m84028_230214_033138_s3.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230214_033138_s3.barcodes.fasta
    │   │   ├── m84028_230214_033138_s3.basecaller.log
    │   │   ├── m84028_230214_033138_s3.baz2bam.log
    │   │   ├── m84028_230214_033138_s3.canary
    │   │   ├── m84028_230214_033138_s3.ccs.log
    │   │   ├── m84028_230214_033138_s3.darkcal.log
    │   │   ├── m84028_230214_033138_s3.fail_reads.lima.log
    │   │   ├── m84028_230214_033138_s3.fail_reads.primrose.log
    │   │   ├── m84028_230214_033138_s3.hifi_reads.lima.log
    │   │   ├── m84028_230214_033138_s3.hifi_reads.primrose.log
    │   │   ├── m84028_230214_033138_s3.metadata.xml
    │   │   ├── m84028_230214_033138_s3.nrt_find.txt
    │   │   ├── m84028_230214_033138_s3.sts.xml
    │   │   ├── m84028_230214_033138_s3.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2026.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2027.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.fail_reads.bc2028.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.fail_reads.json
    │   │   ├── m84028_230214_033138_s3.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2026.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2027.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.hifi_reads.bc2028.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230214_033138_s3.hifi_reads.json
    │   │   └── m84028_230214_033138_s3.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230214_033138_s3.ccs_report.json
    │       ├── m84028_230214_033138_s3.ccs_report.txt
    │       ├── m84028_230214_033138_s3.fail_reads.5mc_report.json
    │       ├── m84028_230214_033138_s3.fail_reads.lima_counts.txt
    │       ├── m84028_230214_033138_s3.fail_reads.lima_report.txt
    │       ├── m84028_230214_033138_s3.fail_reads.lima_summary.txt
    │       ├── m84028_230214_033138_s3.fail_reads.unassigned.json
    │       ├── m84028_230214_033138_s3.hifi_reads.5mc_report.json
    │       ├── m84028_230214_033138_s3.hifi_reads.lima_counts.txt
    │       ├── m84028_230214_033138_s3.hifi_reads.lima_report.txt
    │       ├── m84028_230214_033138_s3.hifi_reads.lima_summary.txt
    │       ├── m84028_230214_033138_s3.hifi_reads.unassigned.json
    │       ├── m84028_230214_033138_s3.summary.json
    │       ├── m84028_230214_033138_s3.zmw_metrics.csv.gz
    │       └── m84028_230214_033138_s3.zmw_metrics.json.gz
    ├── 1_D01
    │   ├── Transfer_Test_230214_022139.txt
    │   ├── fail_reads
    │   │   ├── m84028_230214_040244_s4.fail_reads.bc2003.bam
    │   │   ├── m84028_230214_040244_s4.fail_reads.bc2003.bam.pbi
    │   │   ├── m84028_230214_040244_s4.fail_reads.bc2004.bam
    │   │   ├── m84028_230214_040244_s4.fail_reads.bc2004.bam.pbi
    │   │   ├── m84028_230214_040244_s4.fail_reads.unassigned.bam
    │   │   └── m84028_230214_040244_s4.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230214_040244_s4.hifi_reads.bc2003.bam
    │   │   ├── m84028_230214_040244_s4.hifi_reads.bc2003.bam.pbi
    │   │   ├── m84028_230214_040244_s4.hifi_reads.bc2004.bam
    │   │   ├── m84028_230214_040244_s4.hifi_reads.bc2004.bam.pbi
    │   │   ├── m84028_230214_040244_s4.hifi_reads.unassigned.bam
    │   │   └── m84028_230214_040244_s4.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230214_040244_s4.barcodes.fasta
    │   │   ├── m84028_230214_040244_s4.basecaller.log
    │   │   ├── m84028_230214_040244_s4.baz2bam.log
    │   │   ├── m84028_230214_040244_s4.canary
    │   │   ├── m84028_230214_040244_s4.ccs.log
    │   │   ├── m84028_230214_040244_s4.darkcal.log
    │   │   ├── m84028_230214_040244_s4.fail_reads.lima.log
    │   │   ├── m84028_230214_040244_s4.fail_reads.primrose.log
    │   │   ├── m84028_230214_040244_s4.hifi_reads.lima.log
    │   │   ├── m84028_230214_040244_s4.hifi_reads.primrose.log
    │   │   ├── m84028_230214_040244_s4.metadata.xml
    │   │   ├── m84028_230214_040244_s4.nrt_find.txt
    │   │   ├── m84028_230214_040244_s4.sts.xml
    │   │   ├── m84028_230214_040244_s4.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230214_040244_s4.fail_reads.bc2003.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.fail_reads.bc2004.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.fail_reads.json
    │   │   ├── m84028_230214_040244_s4.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.hifi_reads.bc2003.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.hifi_reads.bc2004.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230214_040244_s4.hifi_reads.json
    │   │   └── m84028_230214_040244_s4.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230214_040244_s4.ccs_report.json
    │       ├── m84028_230214_040244_s4.ccs_report.txt
    │       ├── m84028_230214_040244_s4.fail_reads.5mc_report.json
    │       ├── m84028_230214_040244_s4.fail_reads.lima_counts.txt
    │       ├── m84028_230214_040244_s4.fail_reads.lima_report.txt
    │       ├── m84028_230214_040244_s4.fail_reads.lima_summary.txt
    │       ├── m84028_230214_040244_s4.fail_reads.unassigned.json
    │       ├── m84028_230214_040244_s4.hifi_reads.5mc_report.json
    │       ├── m84028_230214_040244_s4.hifi_reads.lima_counts.txt
    │       ├── m84028_230214_040244_s4.hifi_reads.lima_report.txt
    │       ├── m84028_230214_040244_s4.hifi_reads.lima_summary.txt
    │       ├── m84028_230214_040244_s4.hifi_reads.unassigned.json
    │       ├── m84028_230214_040244_s4.summary.json
    │       ├── m84028_230214_040244_s4.zmw_metrics.csv.gz
    │       └── m84028_230214_040244_s4.zmw_metrics.json.gz
    ├── 2_A01
    │   ├── Transfer_Test_230214_022139.txt
    │   ├── fail_reads
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2040.bam
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2040.bam.pbi
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2041.bam
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2041.bam.pbi
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2042.bam
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2042.bam.pbi
    │   │   ├── m84028_230215_023958_s1.fail_reads.unassigned.bam
    │   │   └── m84028_230215_023958_s1.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2040.bam
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2040.bam.pbi
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2041.bam
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2041.bam.pbi
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2042.bam
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2042.bam.pbi
    │   │   ├── m84028_230215_023958_s1.hifi_reads.unassigned.bam
    │   │   └── m84028_230215_023958_s1.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230215_023958_s1.barcodes.fasta
    │   │   ├── m84028_230215_023958_s1.basecaller.log
    │   │   ├── m84028_230215_023958_s1.baz2bam.log
    │   │   ├── m84028_230215_023958_s1.canary
    │   │   ├── m84028_230215_023958_s1.ccs.log
    │   │   ├── m84028_230215_023958_s1.darkcal.log
    │   │   ├── m84028_230215_023958_s1.fail_reads.lima.log
    │   │   ├── m84028_230215_023958_s1.fail_reads.primrose.log
    │   │   ├── m84028_230215_023958_s1.hifi_reads.lima.log
    │   │   ├── m84028_230215_023958_s1.hifi_reads.primrose.log
    │   │   ├── m84028_230215_023958_s1.metadata.xml
    │   │   ├── m84028_230215_023958_s1.nrt_find.txt
    │   │   ├── m84028_230215_023958_s1.sts.xml
    │   │   ├── m84028_230215_023958_s1.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2040.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2041.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.fail_reads.bc2042.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.fail_reads.json
    │   │   ├── m84028_230215_023958_s1.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2040.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2041.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.hifi_reads.bc2042.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230215_023958_s1.hifi_reads.json
    │   │   └── m84028_230215_023958_s1.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230215_023958_s1.ccs_report.json
    │       ├── m84028_230215_023958_s1.ccs_report.txt
    │       ├── m84028_230215_023958_s1.fail_reads.5mc_report.json
    │       ├── m84028_230215_023958_s1.fail_reads.lima_counts.txt
    │       ├── m84028_230215_023958_s1.fail_reads.lima_report.txt
    │       ├── m84028_230215_023958_s1.fail_reads.lima_summary.txt
    │       ├── m84028_230215_023958_s1.fail_reads.unassigned.json
    │       ├── m84028_230215_023958_s1.hifi_reads.5mc_report.json
    │       ├── m84028_230215_023958_s1.hifi_reads.lima_counts.txt
    │       ├── m84028_230215_023958_s1.hifi_reads.lima_report.txt
    │       ├── m84028_230215_023958_s1.hifi_reads.lima_summary.txt
    │       ├── m84028_230215_023958_s1.hifi_reads.unassigned.json
    │       ├── m84028_230215_023958_s1.summary.json
    │       ├── m84028_230215_023958_s1.zmw_metrics.csv.gz
    │       └── m84028_230215_023958_s1.zmw_metrics.json.gz
    ├── 2_B01
    │   ├── Transfer_Test_230214_022139.txt
    │   ├── fail_reads
    │   │   ├── m84028_230215_031104_s2.fail_reads.bc2005.bam
    │   │   ├── m84028_230215_031104_s2.fail_reads.bc2005.bam.pbi
    │   │   ├── m84028_230215_031104_s2.fail_reads.bc2006.bam
    │   │   ├── m84028_230215_031104_s2.fail_reads.bc2006.bam.pbi
    │   │   ├── m84028_230215_031104_s2.fail_reads.unassigned.bam
    │   │   └── m84028_230215_031104_s2.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230215_031104_s2.hifi_reads.bc2005.bam
    │   │   ├── m84028_230215_031104_s2.hifi_reads.bc2005.bam.pbi
    │   │   ├── m84028_230215_031104_s2.hifi_reads.bc2006.bam
    │   │   ├── m84028_230215_031104_s2.hifi_reads.bc2006.bam.pbi
    │   │   ├── m84028_230215_031104_s2.hifi_reads.unassigned.bam
    │   │   └── m84028_230215_031104_s2.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230215_031104_s2.barcodes.fasta
    │   │   ├── m84028_230215_031104_s2.basecaller.log
    │   │   ├── m84028_230215_031104_s2.baz2bam.log
    │   │   ├── m84028_230215_031104_s2.canary
    │   │   ├── m84028_230215_031104_s2.ccs.log
    │   │   ├── m84028_230215_031104_s2.darkcal.log
    │   │   ├── m84028_230215_031104_s2.fail_reads.lima.log
    │   │   ├── m84028_230215_031104_s2.fail_reads.primrose.log
    │   │   ├── m84028_230215_031104_s2.hifi_reads.lima.log
    │   │   ├── m84028_230215_031104_s2.hifi_reads.primrose.log
    │   │   ├── m84028_230215_031104_s2.metadata.xml
    │   │   ├── m84028_230215_031104_s2.nrt_find.txt
    │   │   ├── m84028_230215_031104_s2.sts.xml
    │   │   ├── m84028_230215_031104_s2.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230215_031104_s2.fail_reads.bc2005.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.fail_reads.bc2006.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.fail_reads.json
    │   │   ├── m84028_230215_031104_s2.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.hifi_reads.bc2005.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.hifi_reads.bc2006.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230215_031104_s2.hifi_reads.json
    │   │   └── m84028_230215_031104_s2.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230215_031104_s2.ccs_report.json
    │       ├── m84028_230215_031104_s2.ccs_report.txt
    │       ├── m84028_230215_031104_s2.fail_reads.5mc_report.json
    │       ├── m84028_230215_031104_s2.fail_reads.lima_counts.txt
    │       ├── m84028_230215_031104_s2.fail_reads.lima_report.txt
    │       ├── m84028_230215_031104_s2.fail_reads.lima_summary.txt
    │       ├── m84028_230215_031104_s2.fail_reads.unassigned.json
    │       ├── m84028_230215_031104_s2.hifi_reads.5mc_report.json
    │       ├── m84028_230215_031104_s2.hifi_reads.lima_counts.txt
    │       ├── m84028_230215_031104_s2.hifi_reads.lima_report.txt
    │       ├── m84028_230215_031104_s2.hifi_reads.lima_summary.txt
    │       ├── m84028_230215_031104_s2.hifi_reads.unassigned.json
    │       ├── m84028_230215_031104_s2.summary.json
    │       ├── m84028_230215_031104_s2.zmw_metrics.csv.gz
    │       └── m84028_230215_031104_s2.zmw_metrics.json.gz
    ├── 2_C01
    │   ├── Transfer_Test_230214_022139.txt
    │   ├── fail_reads
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2043.bam
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2043.bam.pbi
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2044.bam
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2044.bam.pbi
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2045.bam
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2045.bam.pbi
    │   │   ├── m84028_230215_034210_s3.fail_reads.unassigned.bam
    │   │   └── m84028_230215_034210_s3.fail_reads.unassigned.bam.pbi
    │   ├── hifi_reads
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2043.bam
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2043.bam.pbi
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2044.bam
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2044.bam.pbi
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2045.bam
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2045.bam.pbi
    │   │   ├── m84028_230215_034210_s3.hifi_reads.unassigned.bam
    │   │   └── m84028_230215_034210_s3.hifi_reads.unassigned.bam.pbi
    │   ├── metadata
    │   │   ├── m84028_230215_034210_s3.barcodes.fasta
    │   │   ├── m84028_230215_034210_s3.basecaller.log
    │   │   ├── m84028_230215_034210_s3.baz2bam.log
    │   │   ├── m84028_230215_034210_s3.canary
    │   │   ├── m84028_230215_034210_s3.ccs.log
    │   │   ├── m84028_230215_034210_s3.darkcal.log
    │   │   ├── m84028_230215_034210_s3.fail_reads.lima.log
    │   │   ├── m84028_230215_034210_s3.fail_reads.primrose.log
    │   │   ├── m84028_230215_034210_s3.hifi_reads.lima.log
    │   │   ├── m84028_230215_034210_s3.hifi_reads.primrose.log
    │   │   ├── m84028_230215_034210_s3.metadata.xml
    │   │   ├── m84028_230215_034210_s3.nrt_find.txt
    │   │   ├── m84028_230215_034210_s3.sts.xml
    │   │   ├── m84028_230215_034210_s3.transferdone
    │   │   └── nvidia-smi.log
    │   ├── pb_formats
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2043.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2044.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.fail_reads.bc2045.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.fail_reads.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.fail_reads.json
    │   │   ├── m84028_230215_034210_s3.fail_reads.unassigned.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2043.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2044.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.hifi_reads.bc2045.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.hifi_reads.consensusreadset.xml
    │   │   ├── m84028_230215_034210_s3.hifi_reads.json
    │   │   └── m84028_230215_034210_s3.hifi_reads.unassigned.consensusreadset.xml
    │   └── statistics
    │       ├── m84028_230215_034210_s3.ccs_report.json
    │       ├── m84028_230215_034210_s3.ccs_report.txt
    │       ├── m84028_230215_034210_s3.fail_reads.5mc_report.json
    │       ├── m84028_230215_034210_s3.fail_reads.lima_counts.txt
    │       ├── m84028_230215_034210_s3.fail_reads.lima_report.txt
    │       ├── m84028_230215_034210_s3.fail_reads.lima_summary.txt
    │       ├── m84028_230215_034210_s3.fail_reads.unassigned.json
    │       ├── m84028_230215_034210_s3.hifi_reads.5mc_report.json
    │       ├── m84028_230215_034210_s3.hifi_reads.lima_counts.txt
    │       ├── m84028_230215_034210_s3.hifi_reads.lima_report.txt
    │       ├── m84028_230215_034210_s3.hifi_reads.lima_summary.txt
    │       ├── m84028_230215_034210_s3.hifi_reads.unassigned.json
    │       ├── m84028_230215_034210_s3.summary.json
    │       ├── m84028_230215_034210_s3.zmw_metrics.csv.gz
    │       └── m84028_230215_034210_s3.zmw_metrics.json.gz
    └── 2_D01
        ├── Transfer_Test_230214_022139.txt
        ├── fail_reads
        │   ├── m84028_230215_041316_s4.fail_reads.bc2007.bam
        │   ├── m84028_230215_041316_s4.fail_reads.bc2007.bam.pbi
        │   ├── m84028_230215_041316_s4.fail_reads.bc2008.bam
        │   ├── m84028_230215_041316_s4.fail_reads.bc2008.bam.pbi
        │   ├── m84028_230215_041316_s4.fail_reads.unassigned.bam
        │   └── m84028_230215_041316_s4.fail_reads.unassigned.bam.pbi
        ├── hifi_reads
        │   ├── m84028_230215_041316_s4.hifi_reads.bc2007.bam
        │   ├── m84028_230215_041316_s4.hifi_reads.bc2007.bam.pbi
        │   ├── m84028_230215_041316_s4.hifi_reads.bc2008.bam
        │   ├── m84028_230215_041316_s4.hifi_reads.bc2008.bam.pbi
        │   ├── m84028_230215_041316_s4.hifi_reads.unassigned.bam
        │   └── m84028_230215_041316_s4.hifi_reads.unassigned.bam.pbi
        ├── metadata
        │   ├── m84028_230215_041316_s4.barcodes.fasta
        │   ├── m84028_230215_041316_s4.basecaller.log
        │   ├── m84028_230215_041316_s4.baz2bam.log
        │   ├── m84028_230215_041316_s4.canary
        │   ├── m84028_230215_041316_s4.ccs.log
        │   ├── m84028_230215_041316_s4.darkcal.log
        │   ├── m84028_230215_041316_s4.fail_reads.lima.log
        │   ├── m84028_230215_041316_s4.fail_reads.primrose.log
        │   ├── m84028_230215_041316_s4.hifi_reads.lima.log
        │   ├── m84028_230215_041316_s4.hifi_reads.primrose.log
        │   ├── m84028_230215_041316_s4.metadata.xml
        │   ├── m84028_230215_041316_s4.nrt_find.txt
        │   ├── m84028_230215_041316_s4.sts.xml
        │   ├── m84028_230215_041316_s4.transferdone
        │   └── nvidia-smi.log
        ├── pb_formats
        │   ├── m84028_230215_041316_s4.fail_reads.bc2007.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.fail_reads.bc2008.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.fail_reads.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.fail_reads.json
        │   ├── m84028_230215_041316_s4.fail_reads.unassigned.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.hifi_reads.bc2007.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.hifi_reads.bc2008.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.hifi_reads.consensusreadset.xml
        │   ├── m84028_230215_041316_s4.hifi_reads.json
        │   └── m84028_230215_041316_s4.hifi_reads.unassigned.consensusreadset.xml
        └── statistics
            ├── m84028_230215_041316_s4.ccs_report.json
            ├── m84028_230215_041316_s4.ccs_report.txt
            ├── m84028_230215_041316_s4.fail_reads.5mc_report.json
            ├── m84028_230215_041316_s4.fail_reads.lima_counts.txt
            ├── m84028_230215_041316_s4.fail_reads.lima_report.txt
            ├── m84028_230215_041316_s4.fail_reads.lima_summary.txt
            ├── m84028_230215_041316_s4.fail_reads.unassigned.json
            ├── m84028_230215_041316_s4.hifi_reads.5mc_report.json
            ├── m84028_230215_041316_s4.hifi_reads.lima_counts.txt
            ├── m84028_230215_041316_s4.hifi_reads.lima_report.txt
            ├── m84028_230215_041316_s4.hifi_reads.lima_summary.txt
            ├── m84028_230215_041316_s4.hifi_reads.unassigned.json
            ├── m84028_230215_041316_s4.summary.json
            ├── m84028_230215_041316_s4.zmw_metrics.csv.gz
            └── m84028_230215_041316_s4.zmw_metrics.json.gz

    48 directories, 448 files