Index of /public/revio/2024Q4/WGS/benchmark

Icon  Name                                             Last modified      Size  Description
[PARENTDIR] Parent Directory                                                      -   
[DIR] aligned_bam/                                     2024-11-01 10:53    -   
[   ] HG002-20fold.GRCh38.small_variants.phased.vcf.gz 2024-10-31 14:42  119M  
[   ] HG002-20fold.genotyped.sawfish.sv.vcf.gz         2024-10-31 15:48  4.5M  
[   ] HG002-30fold.GRCh38.small_variants.phased.vcf.gz 2024-10-31 15:11  121M  
[   ] HG002-30fold.genotyped.sawfish.sv.vcf.gz         2024-10-31 15:49  4.6M  
[TXT] README.md                                        2024-10-31 16:11  967   
[TXT] README.txt                                       2024-10-31 16:11  967   

# README

This variant call-set release includes down-sampled reads processed using the HiFi Human Whole Genome Sequencing (WGS) Workflow Definition Language (WDL), available at: [HiFi-human-WGS-WDL v2.0.0-rc4](https://github.com/PacificBiosciences/pb-benchmarks/blob/main/README.md). The tagged release provides details on all software versions and processing steps. Note that down-sampling was performed approximately.

For structural variation, Sawfish (v0.12.4) was used on the processed BAM files. Additional information is available in the [PacBio Repository](https://github.com/PacificBiosciences/pb-benchmarks/blob/main/README.md).

### MD5 Checksums

- **20-fold coverage small variants**: `e957d52e7574973f4072c13ed9955906`
- **30-fold coverage small variants**: `99164a14c1721e8f23f66e6f0916959a`
- **20-fold coverage structural variants**: `f20321a6eaa489528cacce0a63cabeb6`
- **30-fold coverage structural variants**: `f0f257d74a353e6f7c1ac2a480dab285`