>|> 20201023 00:59:56.033 -|- INFO -|- LaaRunner -|- 0x2b8727a7ac00|| -|- Welcome to pbaa.

>|> 20201023 00:59:56.212 -|- INFO -|- GraphProcessing -|- 0x2b8727a7ac00|| -|- 43 sequence entries.
>|> 20201023 00:59:56.212 -|- INFO -|- GraphProcessing -|- 0x2b8727a7ac00|| -|- 234136 nodes before filtering.
>|> 20201023 00:59:56.298 -|- INFO -|- GraphProcessing -|- 0x2b8727a7ac00|| -|- 131707 nodes after filtering.

>|> 20201023 00:59:56.298 -|- INFO -|- GetGuideInfo -|- 0x2b8727a7ac00|| -|- Processing 43 guide loci.
>|> 20201023 00:59:56.446 -|- INFO -|- GetGuideInfo -|- 0x2b8727a7ac00|| -|- There are 131707 unique kmers within guide sequence(s).

>|> 20201023 00:59:56.625 -|- WARN -|- operator() -|- 0x2b8727a7ac00|| -|- m64012_200712_164638/167052544/ccs has no guide hits, skipping read.
>|> 20201023 00:59:57.432 -|- INFO -|- ClusterReads -|- 0x2b8727a7ac00|| -|- Clustered sample: ../fastq_600/demultiplex.24631-HG005.fastq locus: HLA-A nreads: 104 nvariants before filter: 0 nvariants after filter: 0 nclusters: 4

>|> 20201023 00:59:59.322 -|- INFO -|- ClusterReads -|- 0x2b8727a7ac00|| -|- Clustered sample: ../fastq_600/demultiplex.24631-HG005.fastq locus: HLA-B nreads: 43 nvariants before filter: 20 nvariants after filter: 20 nclusters: 9

>|> 20201023 01:00:00.972 -|- INFO -|- ClusterReads -|- 0x2b8727a7ac00|| -|- Clustered sample: ../fastq_600/demultiplex.24631-HG005.fastq locus: HLA-C nreads: 40 nvariants before filter: 21 nvariants after filter: 21 nclusters: 6

>|> 20201023 01:00:02.414 -|- INFO -|- ClusterReads -|- 0x2b8727a7ac00|| -|- Clustered sample: ../fastq_600/demultiplex.24631-HG005.fastq locus: HLA-DPB1 nreads: 110 nvariants before filter: 6 nvariants after filter: 6 nclusters: 10

>|> 20201023 01:00:06.562 -|- INFO -|- ClusterReads -|- 0x2b8727a7ac00|| -|- Clustered sample: ../fastq_600/demultiplex.24631-HG005.fastq locus: HLA-DQB1 nreads: 147 nvariants before filter: 14 nvariants after filter: 14 nclusters: 10

>|> 20201023 01:00:11.866 -|- INFO -|- ClusterReads -|- 0x2b8727a7ac00|| -|- Clustered sample: ../fastq_600/demultiplex.24631-HG005.fastq locus: HLA-DRB1 nreads: 155 nvariants before filter: 17 nvariants after filter: 17 nclusters: 9

>|> 20201023 01:00:11.872 -|- INFO -|- LaaRunner -|- 0x2b8727a7ac00|| -|- Generating consensus sequences for clusters.
>|> 20201023 01:00:13.619 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/135070485/ccs rounded length: 5300 skipped > 100 bp. from best length.
>|> 20201023 01:00:13.619 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/148310122/ccs rounded length: 4300 skipped > 100 bp. from best length.
>|> 20201023 01:00:14.059 -|- WARN -|- operator() -|- 0x2b8729775700|| -|- read: m64012_200712_164638/1050304/ccs rounded length: 4100 skipped > 100 bp. from best length.
>|> 20201023 01:00:19.754 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/22742739/ccs rounded length: 5300 skipped > 100 bp. from best length.
>|> 20201023 01:00:19.754 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/61670711/ccs rounded length: 5300 skipped > 100 bp. from best length.
>|> 20201023 01:00:21.693 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/90375443/ccs rounded length: 4800 skipped > 100 bp. from best length.
>|> 20201023 01:00:25.222 -|- WARN -|- operator() -|- 0x2b8729d78700|| -|- read: m64012_200712_164638/142870730/ccs rounded length: 5300 skipped > 100 bp. from best length.
>|> 20201023 01:00:25.489 -|- WARN -|- operator() -|- 0x2b8729775700|| -|- read: m64012_200712_164638/121045009/ccs rounded length: 2900 skipped > 100 bp. from best length.
>|> 20201023 01:00:28.711 -|- WARN -|- operator() -|- 0x2b8729d78700|| -|- read: m64012_200712_164638/71632586/ccs rounded length: 3500 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.184 -|- WARN -|- operator() -|- 0x2b8729b77700|| -|- read: m64012_200712_164638/74975092/ccs rounded length: 1700 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.836 -|- WARN -|- operator() -|- 0x2b8729d78700|| -|- read: m64012_200712_164638/111216204/ccs rounded length: 3100 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.836 -|- WARN -|- operator() -|- 0x2b8729d78700|| -|- read: m64012_200712_164638/150275780/ccs rounded length: 2800 skipped > 100 bp. from best length.
>|> 20201023 01:00:32.827 -|- WARN -|- operator() -|- 0x2b8729b77700|| -|- read: m64012_200712_164638/3344851/ccs rounded length: 3600 skipped > 100 bp. from best length.
>|> 20201023 01:00:35.002 -|- WARN -|- operator() -|- 0x2b8729d78700|| -|- read: m64012_200712_164638/135268580/ccs rounded length: 5000 skipped > 100 bp. from best length.
>|> 20201023 01:00:35.041 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/140445218/ccs rounded length: 3200 skipped > 100 bp. from best length.
>|> 20201023 01:00:39.661 -|- WARN -|- operator() -|- 0x2b8728f71700|| -|- read: m64012_200712_164638/157549985/ccs rounded length: 3100 skipped > 100 bp. from best length.
>|> 20201023 01:00:48.208 -|- WARN -|- operator() -|- 0x2b8729775700|| -|- read: m64012_200712_164638/164889906/ccs rounded length: 4300 skipped > 100 bp. from best length.
>|> 20201023 01:00:55.311 -|- WARN -|- operator() -|- 0x2b8729574700|| -|- read: m64012_200712_164638/163840655/ccs rounded length: 3700 skipped > 100 bp. from best length.
>|> 20201023 01:01:01.112 -|- WARN -|- operator() -|- 0x2b8729574700|| -|- read: m64012_200712_164638/175245822/ccs rounded length: 3200 skipped > 100 bp. from best length.
>|> 20201023 01:01:06.780 -|- WARN -|- operator() -|- 0x2b8729775700|| -|- read: m64012_200712_164638/5048837/ccs rounded length: 3700 skipped > 100 bp. from best length.
>|> 20201023 01:01:16.675 -|- WARN -|- operator() -|- 0x2b8729775700|| -|- read: m64012_200712_164638/75827524/ccs rounded length: 5100 skipped > 100 bp. from best length.
>|> 20201023 01:01:43.172 -|- INFO -|- LaaRunner -|- 0x2b8727a7ac00|| -|- pbaa finished without error. Goodbye.