>|> 20201023 00:59:56.053 -|- INFO -|- LaaRunner -|- 0x2b3928519c00|| -|- Welcome to pbaa.

>|> 20201023 00:59:56.223 -|- INFO -|- GraphProcessing -|- 0x2b3928519c00|| -|- 43 sequence entries.
>|> 20201023 00:59:56.223 -|- INFO -|- GraphProcessing -|- 0x2b3928519c00|| -|- 234136 nodes before filtering.
>|> 20201023 00:59:56.320 -|- INFO -|- GraphProcessing -|- 0x2b3928519c00|| -|- 131707 nodes after filtering.

>|> 20201023 00:59:56.320 -|- INFO -|- GetGuideInfo -|- 0x2b3928519c00|| -|- Processing 43 guide loci.
>|> 20201023 00:59:56.466 -|- INFO -|- GetGuideInfo -|- 0x2b3928519c00|| -|- There are 131707 unique kmers within guide sequence(s).

>|> 20201023 00:59:57.205 -|- WARN -|- operator() -|- 0x2b3928519c00|| -|- m64012_200712_164638/157942763/ccs has no guide hits, skipping read.
>|> 20201023 01:00:01.241 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-A nreads: 71 nvariants before filter: 26 nvariants after filter: 26 nclusters: 9

>|> 20201023 01:00:02.832 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-B nreads: 45 nvariants before filter: 18 nvariants after filter: 18 nclusters: 10

>|> 20201023 01:00:05.580 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-C nreads: 66 nvariants before filter: 18 nvariants after filter: 18 nclusters: 10

>|> 20201023 01:00:05.918 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-DPB1 nreads: 45 nvariants before filter: 3 nvariants after filter: 3 nclusters: 6

>|> 20201023 01:00:05.927 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-DQA1 nreads: 1 nvariants before filter: 0 nvariants after filter: 0 nclusters: 1

>|> 20201023 01:00:11.105 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-DQB1 nreads: 228 nvariants before filter: 11 nvariants after filter: 11 nclusters: 10

>|> 20201023 01:00:13.656 -|- INFO -|- ClusterReads -|- 0x2b3928519c00|| -|- Clustered sample: ../fastq_600/demultiplex.24385-HG002.fastq locus: HLA-DRB1 nreads: 143 nvariants before filter: 7 nvariants after filter: 7 nclusters: 6

>|> 20201023 01:00:13.661 -|- INFO -|- LaaRunner -|- 0x2b3928519c00|| -|- Generating consensus sequences for clusters.
>|> 20201023 01:00:18.241 -|- WARN -|- operator() -|- 0x2b3929e12700|| -|- read: m64012_200712_164638/105384450/ccs rounded length: 4100 skipped > 100 bp. from best length.
>|> 20201023 01:00:20.213 -|- WARN -|- operator() -|- 0x2b392a616700|| -|- read: m64012_200712_164638/146801768/ccs rounded length: 5300 skipped > 100 bp. from best length.
>|> 20201023 01:00:20.262 -|- WARN -|- operator() -|- 0x2b3929e12700|| -|- read: m64012_200712_164638/133628101/ccs rounded length: 5200 skipped > 100 bp. from best length.
>|> 20201023 01:00:23.976 -|- WARN -|- operator() -|- 0x2b392a214700|| -|- read: m64012_200712_164638/96012632/ccs rounded length: 3200 skipped > 100 bp. from best length.
>|> 20201023 01:00:24.070 -|- WARN -|- operator() -|- 0x2b392a214700|| -|- read: m64012_200712_164638/121636149/ccs rounded length: 4900 skipped > 100 bp. from best length.
>|> 20201023 01:00:24.070 -|- WARN -|- operator() -|- 0x2b392a214700|| -|- read: m64012_200712_164638/32376772/ccs rounded length: 4700 skipped > 100 bp. from best length.
>|> 20201023 01:00:25.117 -|- WARN -|- operator() -|- 0x2b392a013700|| -|- read: m64012_200712_164638/107676159/ccs rounded length: 5400 skipped > 100 bp. from best length.
>|> 20201023 01:00:29.602 -|- WARN -|- operator() -|- 0x2b392a616700|| -|- read: m64012_200712_164638/80937159/ccs rounded length: 5100 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.098 -|- WARN -|- operator() -|- 0x2b392a013700|| -|- read: m64012_200712_164638/85656959/ccs rounded length: 5300 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.658 -|- WARN -|- operator() -|- 0x2b3929e12700|| -|- read: m64012_200712_164638/49218549/ccs rounded length: 5400 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.658 -|- WARN -|- operator() -|- 0x2b3929e12700|| -|- read: m64012_200712_164638/52365213/ccs rounded length: 5400 skipped > 100 bp. from best length.
>|> 20201023 01:00:31.766 -|- WARN -|- operator() -|- 0x2b3929a10700|| -|- read: m64012_200712_164638/104530621/ccs rounded length: 3500 skipped > 100 bp. from best length.
>|> 20201023 01:00:32.806 -|- WARN -|- operator() -|- 0x2b3929e12700|| -|- read: m64012_200712_164638/68223020/ccs rounded length: 5200 skipped > 100 bp. from best length.
>|> 20201023 01:00:40.244 -|- WARN -|- operator() -|- 0x2b3929c11700|| -|- read: m64012_200712_164638/143721612/ccs rounded length: 4600 skipped > 100 bp. from best length.
>|> 20201023 01:00:40.244 -|- WARN -|- operator() -|- 0x2b3929c11700|| -|- read: m64012_200712_164638/147718555/ccs rounded length: 4600 skipped > 100 bp. from best length.
>|> 20201023 01:00:42.275 -|- WARN -|- operator() -|- 0x2b3929c11700|| -|- read: m64012_200712_164638/162595019/ccs rounded length: 3800 skipped > 100 bp. from best length.
>|> 20201023 01:00:46.842 -|- WARN -|- operator() -|- 0x2b3929c11700|| -|- read: m64012_200712_164638/37552426/ccs rounded length: 5600 skipped > 100 bp. from best length.
>|> 20201023 01:00:49.503 -|- WARN -|- operator() -|- 0x2b3929c11700|| -|- read: m64012_200712_164638/62194543/ccs rounded length: 3700 skipped > 100 bp. from best length.
>|> 20201023 01:01:19.482 -|- WARN -|- operator() -|- 0x2b392a013700|| -|- read: m64012_200712_164638/37226460/ccs rounded length: 2800 skipped > 100 bp. from best length.
>|> 20201023 01:01:34.753 -|- INFO -|- LaaRunner -|- 0x2b3928519c00|| -|- pbaa finished without error. Goodbye.