>|> 20201023 00:59:55.720 -|- INFO -|- LaaRunner -|- 0x2abfabef1c00|| -|- Welcome to pbaa.

>|> 20201023 00:59:55.863 -|- INFO -|- GraphProcessing -|- 0x2abfabef1c00|| -|- 43 sequence entries.
>|> 20201023 00:59:55.863 -|- INFO -|- GraphProcessing -|- 0x2abfabef1c00|| -|- 234136 nodes before filtering.
>|> 20201023 00:59:55.930 -|- INFO -|- GraphProcessing -|- 0x2abfabef1c00|| -|- 131707 nodes after filtering.

>|> 20201023 00:59:55.930 -|- INFO -|- GetGuideInfo -|- 0x2abfabef1c00|| -|- Processing 43 guide loci.
>|> 20201023 00:59:56.014 -|- INFO -|- GetGuideInfo -|- 0x2abfabef1c00|| -|- There are 131707 unique kmers within guide sequence(s).

>|> 20201023 01:00:00.435 -|- INFO -|- ClusterReads -|- 0x2abfabef1c00|| -|- Clustered sample: ../fastq_600/demultiplex.24143-HG004.fastq locus: HLA-A nreads: 81 nvariants before filter: 22 nvariants after filter: 22 nclusters: 10

>|> 20201023 01:00:01.555 -|- INFO -|- ClusterReads -|- 0x2abfabef1c00|| -|- Clustered sample: ../fastq_600/demultiplex.24143-HG004.fastq locus: HLA-B nreads: 47 nvariants before filter: 12 nvariants after filter: 12 nclusters: 10

>|> 20201023 01:00:04.081 -|- INFO -|- ClusterReads -|- 0x2abfabef1c00|| -|- Clustered sample: ../fastq_600/demultiplex.24143-HG004.fastq locus: HLA-C nreads: 86 nvariants before filter: 15 nvariants after filter: 15 nclusters: 10

>|> 20201023 01:00:04.199 -|- INFO -|- ClusterReads -|- 0x2abfabef1c00|| -|- Clustered sample: ../fastq_600/demultiplex.24143-HG004.fastq locus: HLA-DPB1 nreads: 34 nvariants before filter: 1 nvariants after filter: 1 nclusters: 2

>|> 20201023 01:00:09.921 -|- INFO -|- ClusterReads -|- 0x2abfabef1c00|| -|- Clustered sample: ../fastq_600/demultiplex.24143-HG004.fastq locus: HLA-DQB1 nreads: 225 nvariants before filter: 13 nvariants after filter: 13 nclusters: 9

>|> 20201023 01:00:11.479 -|- INFO -|- ClusterReads -|- 0x2abfabef1c00|| -|- Clustered sample: ../fastq_600/demultiplex.24143-HG004.fastq locus: HLA-DRB1 nreads: 127 nvariants before filter: 6 nvariants after filter: 6 nclusters: 4

>|> 20201023 01:00:11.482 -|- INFO -|- LaaRunner -|- 0x2abfabef1c00|| -|- Generating consensus sequences for clusters.
>|> 20201023 01:00:13.389 -|- WARN -|- operator() -|- 0x2abfad9eb700|| -|- read: m64012_200712_164638/110626726/ccs rounded length: 5100 skipped > 100 bp. from best length.
>|> 20201023 01:00:13.389 -|- WARN -|- operator() -|- 0x2abfad9eb700|| -|- read: m64012_200712_164638/113902952/ccs rounded length: 5400 skipped > 100 bp. from best length.
>|> 20201023 01:00:13.899 -|- WARN -|- operator() -|- 0x2abfad3e8700|| -|- read: m64012_200712_164638/135660826/ccs rounded length: 3400 skipped > 100 bp. from best length.
>|> 20201023 01:00:14.738 -|- WARN -|- operator() -|- 0x2abfad3e8700|| -|- read: m64012_200712_164638/145163585/ccs rounded length: 2700 skipped > 100 bp. from best length.
>|> 20201023 01:00:17.481 -|- WARN -|- operator() -|- 0x2abfad3e8700|| -|- read: m64012_200712_164638/20384134/ccs rounded length: 3400 skipped > 100 bp. from best length.
>|> 20201023 01:00:21.036 -|- WARN -|- operator() -|- 0x2abfadbec700|| -|- read: m64012_200712_164638/54723797/ccs rounded length: 3400 skipped > 100 bp. from best length.
>|> 20201023 01:00:22.283 -|- WARN -|- operator() -|- 0x2abfadfee700|| -|- read: m64012_200712_164638/55772000/ccs rounded length: 1700 skipped > 100 bp. from best length.
>|> 20201023 01:00:26.238 -|- WARN -|- operator() -|- 0x2abfadbec700|| -|- read: m64012_200712_164638/133760595/ccs rounded length: 3800 skipped > 100 bp. from best length.
>|> 20201023 01:00:27.678 -|- WARN -|- operator() -|- 0x2abfad9eb700|| -|- read: m64012_200712_164638/16516417/ccs rounded length: 2700 skipped > 100 bp. from best length.
>|> 20201023 01:00:28.925 -|- WARN -|- operator() -|- 0x2abfad9eb700|| -|- read: m64012_200712_164638/30148019/ccs rounded length: 5400 skipped > 100 bp. from best length.
>|> 20201023 01:00:30.256 -|- WARN -|- operator() -|- 0x2abfad9eb700|| -|- read: m64012_200712_164638/37291575/ccs rounded length: 5400 skipped > 100 bp. from best length.
>|> 20201023 01:00:33.625 -|- WARN -|- operator() -|- 0x2abfae1ef700|| -|- read: m64012_200712_164638/145688107/ccs rounded length: 1400 skipped > 100 bp. from best length.
>|> 20201023 01:00:39.406 -|- WARN -|- operator() -|- 0x2abfad9eb700|| -|- read: m64012_200712_164638/77923396/ccs rounded length: 4400 skipped > 100 bp. from best length.
>|> 20201023 01:00:44.177 -|- WARN -|- operator() -|- 0x2abfae1ef700|| -|- read: m64012_200712_164638/21628508/ccs rounded length: 3100 skipped > 100 bp. from best length.
>|> 20201023 01:00:50.155 -|- WARN -|- operator() -|- 0x2abfad5e9700|| -|- read: m64012_200712_164638/60227594/ccs rounded length: 3300 skipped > 100 bp. from best length.
>|> 20201023 01:01:14.803 -|- INFO -|- LaaRunner -|- 0x2abfabef1c00|| -|- pbaa finished without error. Goodbye.