Classifications
-------------
Input   : 1008621
Passed  : 532105 (52.76%)
Removed : 476516 (47.24%)

Unique genes       : 25041
Unique transcripts : 256791

Classifications, by isoform
-------------
Full splice match       : 133598 (25.11%)
Incomplete splice match : 201354 (37.84%)
Novel in catalog        : 94952 (17.84%)
Novel not in catalog    : 92442 (17.37%)
Antisense               : 1890 (0.36%)
Genic intron            : 0 (0.00%)
Genic genomic           : 984 (0.18%)
Intergenic              : 2798 (0.53%)
Other                   : 4087 (0.77%)

Classifications, by read
-------------
Full splice match       : 25906813 (79.13%)
Incomplete splice match : 4758799 (14.54%)
Novel in catalog        : 1188332 (3.63%)
Novel not in catalog    : 823044 (2.51%)
Antisense               : 11437 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 5778 (0.02%)
Intergenic              : 21893 (0.07%)
Other                   : 22462 (0.07%)

Junctions
-----------
Known canonical     : 3905572 (95.81%)
Known non-canonical : 344 (0.01%)
Novel canonical     : 170324 (4.18%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21389 (85.42%)
Novel : 3652 (14.58%)

Filter reasons
----------------
Intrapriming               : 198495 (41.66%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9534 (2.00%)
Low coverage/non-canonical : 268487 (56.34%)