Classifications
-------------
Input   : 1136953
Passed  : 549470 (48.33%)
Removed : 587483 (51.67%)

Unique genes       : 24949
Unique transcripts : 256561

Classifications, by isoform
-------------
Full splice match       : 140128 (25.50%)
Incomplete splice match : 214998 (39.13%)
Novel in catalog        : 97187 (17.69%)
Novel not in catalog    : 88620 (16.13%)
Antisense               : 1609 (0.29%)
Genic intron            : 0 (0.00%)
Genic genomic           : 984 (0.18%)
Intergenic              : 2339 (0.43%)
Other                   : 3605 (0.66%)

Classifications, by read
-------------
Full splice match       : 22688389 (77.54%)
Incomplete splice match : 4823084 (16.48%)
Novel in catalog        : 998672 (3.41%)
Novel not in catalog    : 710953 (2.43%)
Antisense               : 7069 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 4589 (0.02%)
Intergenic              : 11958 (0.04%)
Other                   : 17111 (0.06%)

Junctions
-----------
Known canonical     : 3966135 (96.15%)
Known non-canonical : 337 (0.01%)
Novel canonical     : 158528 (3.84%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21754 (87.19%)
Novel : 3195 (12.81%)

Filter reasons
----------------
Intrapriming               : 266254 (45.32%)
Monoexonic                 : 0 (0.00%)
RT switching               : 10228 (1.74%)
Low coverage/non-canonical : 311001 (52.94%)