Classifications
-------------
Input   : 1194425
Passed  : 598458 (50.10%)
Removed : 595967 (49.90%)

Unique genes       : 25345
Unique transcripts : 298469

Classifications, by isoform
-------------
Full splice match       : 148420 (24.80%)
Incomplete splice match : 215035 (35.93%)
Novel in catalog        : 115607 (19.32%)
Novel not in catalog    : 110029 (18.39%)
Antisense               : 1812 (0.30%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1119 (0.19%)
Intergenic              : 2645 (0.44%)
Other                   : 3791 (0.63%)

Classifications, by read
-------------
Full splice match       : 30022638 (80.31%)
Incomplete splice match : 5032310 (13.46%)
Novel in catalog        : 1332176 (3.56%)
Novel not in catalog    : 948538 (2.54%)
Antisense               : 9447 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 5452 (0.01%)
Intergenic              : 13318 (0.04%)
Other                   : 17394 (0.05%)

Junctions
-----------
Known canonical     : 4375269 (95.73%)
Known non-canonical : 355 (0.01%)
Novel canonical     : 194610 (4.26%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21751 (85.82%)
Novel : 3594 (14.18%)

Filter reasons
----------------
Intrapriming               : 273726 (45.93%)
Monoexonic                 : 0 (0.00%)
RT switching               : 11636 (1.95%)
Low coverage/non-canonical : 310605 (52.12%)