Classifications
-------------
Input   : 1209828
Passed  : 645629 (53.37%)
Removed : 564199 (46.63%)

Unique genes       : 25752
Unique transcripts : 315376

Classifications, by isoform
-------------
Full splice match       : 146239 (22.65%)
Incomplete splice match : 247444 (38.33%)
Novel in catalog        : 124088 (19.22%)
Novel not in catalog    : 117638 (18.22%)
Antisense               : 1976 (0.31%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1064 (0.16%)
Intergenic              : 3578 (0.55%)
Other                   : 3602 (0.56%)

Classifications, by read
-------------
Full splice match       : 24287224 (72.79%)
Incomplete splice match : 6962748 (20.87%)
Novel in catalog        : 1199993 (3.60%)
Novel not in catalog    : 867688 (2.60%)
Antisense               : 11114 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 4400 (0.01%)
Intergenic              : 18904 (0.06%)
Other                   : 13822 (0.04%)

Junctions
-----------
Known canonical     : 4536588 (95.46%)
Known non-canonical : 322 (0.01%)
Novel canonical     : 215285 (4.53%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21270 (82.60%)
Novel : 4482 (17.40%)

Filter reasons
----------------
Intrapriming               : 213992 (37.93%)
Monoexonic                 : 0 (0.00%)
RT switching               : 11708 (2.08%)
Low coverage/non-canonical : 338499 (60.00%)