Classifications
-------------
Input   : 937652
Passed  : 500718 (53.40%)
Removed : 436934 (46.60%)

Unique genes       : 22128
Unique transcripts : 248774

Classifications, by isoform
-------------
Full splice match       : 129562 (25.88%)
Incomplete splice match : 178915 (35.73%)
Novel in catalog        : 98914 (19.75%)
Novel not in catalog    : 86736 (17.32%)
Antisense               : 1168 (0.23%)
Genic intron            : 0 (0.00%)
Genic genomic           : 769 (0.15%)
Intergenic              : 2149 (0.43%)
Other                   : 2505 (0.50%)

Classifications, by read
-------------
Full splice match       : 23046223 (80.93%)
Incomplete splice match : 3592716 (12.62%)
Novel in catalog        : 1089115 (3.82%)
Novel not in catalog    : 713286 (2.50%)
Antisense               : 7816 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3482 (0.01%)
Intergenic              : 13052 (0.05%)
Other                   : 12132 (0.04%)

Junctions
-----------
Known canonical     : 3741356 (95.98%)
Known non-canonical : 313 (0.01%)
Novel canonical     : 156299 (4.01%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 19436 (87.83%)
Novel : 2692 (12.17%)

Filter reasons
----------------
Intrapriming               : 189393 (43.35%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9161 (2.10%)
Low coverage/non-canonical : 238380 (54.56%)