Classifications
-------------
Input   : 1740533
Passed  : 573952 (32.98%)
Removed : 1166581 (67.02%)

Unique genes       : 27739
Unique transcripts : 241542

Classifications, by isoform
-------------
Full splice match       : 132362 (23.06%)
Incomplete splice match : 264114 (46.02%)
Novel in catalog        : 81551 (14.21%)
Novel not in catalog    : 83945 (14.63%)
Antisense               : 2518 (0.44%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1278 (0.22%)
Intergenic              : 5544 (0.97%)
Other                   : 2640 (0.46%)

Classifications, by read
-------------
Full splice match       : 17307654 (57.45%)
Incomplete splice match : 11598380 (38.50%)
Novel in catalog        : 618540 (2.05%)
Novel not in catalog    : 534702 (1.77%)
Antisense               : 23017 (0.08%)
Genic intron            : 0 (0.00%)
Genic genomic           : 5483 (0.02%)
Intergenic              : 27196 (0.09%)
Other                   : 10159 (0.03%)

Junctions
-----------
Known canonical     : 2905127 (94.95%)
Known non-canonical : 187 (0.01%)
Novel canonical     : 154299 (5.04%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21169 (76.31%)
Novel : 6570 (23.69%)

Filter reasons
----------------
Intrapriming               : 527395 (45.21%)
Monoexonic                 : 0 (0.00%)
RT switching               : 10958 (0.94%)
Low coverage/non-canonical : 628228 (53.85%)