Classifications
-------------
Input   : 1221887
Passed  : 571707 (46.79%)
Removed : 650180 (53.21%)

Unique genes       : 24833
Unique transcripts : 284171

Classifications, by isoform
-------------
Full splice match       : 141446 (24.74%)
Incomplete splice match : 206541 (36.13%)
Novel in catalog        : 112339 (19.65%)
Novel not in catalog    : 101090 (17.68%)
Antisense               : 2168 (0.38%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1267 (0.22%)
Intergenic              : 3819 (0.67%)
Other                   : 3037 (0.53%)

Classifications, by read
-------------
Full splice match       : 25039292 (78.58%)
Incomplete splice match : 4566196 (14.33%)
Novel in catalog        : 1251349 (3.93%)
Novel not in catalog    : 949569 (2.98%)
Antisense               : 16430 (0.05%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6335 (0.02%)
Intergenic              : 24244 (0.08%)
Other                   : 13092 (0.04%)

Junctions
-----------
Known canonical     : 4036866 (95.62%)
Known non-canonical : 320 (0.01%)
Novel canonical     : 184554 (4.37%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 20204 (81.36%)
Novel : 4629 (18.64%)

Filter reasons
----------------
Intrapriming               : 319216 (49.10%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9606 (1.48%)
Low coverage/non-canonical : 321358 (49.43%)