Classifications
-------------
Input   : 1467955
Passed  : 660636 (45.00%)
Removed : 807319 (55.00%)

Unique genes       : 25566
Unique transcripts : 331106

Classifications, by isoform
-------------
Full splice match       : 152569 (23.09%)
Incomplete splice match : 239310 (36.22%)
Novel in catalog        : 135772 (20.55%)
Novel not in catalog    : 121893 (18.45%)
Antisense               : 2347 (0.36%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1372 (0.21%)
Intergenic              : 4027 (0.61%)
Other                   : 3346 (0.51%)

Classifications, by read
-------------
Full splice match       : 28717354 (75.64%)
Incomplete splice match : 6307482 (16.61%)
Novel in catalog        : 1573212 (4.14%)
Novel not in catalog    : 1083217 (2.85%)
Antisense               : 20956 (0.06%)
Genic intron            : 0 (0.00%)
Genic genomic           : 219877 (0.58%)
Intergenic              : 28022 (0.07%)
Other                   : 15821 (0.04%)

Junctions
-----------
Known canonical     : 4783328 (95.54%)
Known non-canonical : 357 (0.01%)
Novel canonical     : 223153 (4.46%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 20744 (81.14%)
Novel : 4822 (18.86%)

Filter reasons
----------------
Intrapriming               : 401026 (49.67%)
Monoexonic                 : 0 (0.00%)
RT switching               : 13072 (1.62%)
Low coverage/non-canonical : 393221 (48.71%)