Classifications
-------------
Input   : 1388076
Passed  : 678180 (48.86%)
Removed : 709896 (51.14%)

Unique genes       : 26102
Unique transcripts : 352374

Classifications, by isoform
-------------
Full splice match       : 154763 (22.82%)
Incomplete splice match : 234596 (34.59%)
Novel in catalog        : 140567 (20.73%)
Novel not in catalog    : 136622 (20.15%)
Antisense               : 2726 (0.40%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1320 (0.19%)
Intergenic              : 3956 (0.58%)
Other                   : 3630 (0.54%)

Classifications, by read
-------------
Full splice match       : 31749647 (77.61%)
Incomplete splice match : 6191759 (15.14%)
Novel in catalog        : 1667976 (4.08%)
Novel not in catalog    : 1225128 (2.99%)
Antisense               : 23568 (0.06%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6403 (0.02%)
Intergenic              : 27588 (0.07%)
Other                   : 16208 (0.04%)

Junctions
-----------
Known canonical     : 4839729 (95.08%)
Known non-canonical : 346 (0.01%)
Novel canonical     : 249889 (4.91%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21170 (81.10%)
Novel : 4932 (18.90%)

Filter reasons
----------------
Intrapriming               : 333722 (47.01%)
Monoexonic                 : 0 (0.00%)
RT switching               : 13559 (1.91%)
Low coverage/non-canonical : 362615 (51.08%)