Classifications
-------------
Input   : 1116674
Passed  : 567811 (50.85%)
Removed : 548863 (49.15%)

Unique genes       : 23541
Unique transcripts : 280036

Classifications, by isoform
-------------
Full splice match       : 142861 (25.16%)
Incomplete splice match : 203565 (35.85%)
Novel in catalog        : 108828 (19.17%)
Novel not in catalog    : 103695 (18.26%)
Antisense               : 1887 (0.33%)
Genic intron            : 0 (0.00%)
Genic genomic           : 973 (0.17%)
Intergenic              : 2973 (0.52%)
Other                   : 3029 (0.53%)

Classifications, by read
-------------
Full splice match       : 28503389 (79.81%)
Incomplete splice match : 4802726 (13.45%)
Novel in catalog        : 1364450 (3.82%)
Novel not in catalog    : 976939 (2.74%)
Antisense               : 18023 (0.05%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6256 (0.02%)
Intergenic              : 23224 (0.07%)
Other                   : 16968 (0.05%)

Junctions
-----------
Known canonical     : 4209541 (95.71%)
Known non-canonical : 344 (0.01%)
Novel canonical     : 188215 (4.28%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 19905 (84.55%)
Novel : 3636 (15.45%)

Filter reasons
----------------
Intrapriming               : 252291 (45.97%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9973 (1.82%)
Low coverage/non-canonical : 286599 (52.22%)