Classifications
-------------
Input   : 1715116
Passed  : 502910 (29.32%)
Removed : 1212206 (70.68%)

Unique genes       : 44493
Unique transcripts : 395824

Classifications, by isoform
-------------
Full splice match       : 58715 (11.68%)
Incomplete splice match : 102761 (20.43%)
Novel in catalog        : 52619 (10.46%)
Novel not in catalog    : 252308 (50.17%)
Antisense               : 10734 (2.13%)
Genic intron            : 0 (0.00%)
Genic genomic           : 8120 (1.61%)
Intergenic              : 14307 (2.84%)
Other                   : 3346 (0.67%)

Classifications, by read
-------------
Full splice match       : NA
Incomplete splice match : NA
Novel in catalog        : NA
Novel not in catalog    : NA
Antisense               : NA
Genic intron            : NA
Genic genomic           : NA
Intergenic              : NA
Other                   : NA

Junctions
-----------
Known canonical     : 1482027 (80.13%)
Known non-canonical : 63 (0.00%)
Novel canonical     : 367444 (19.87%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 25434 (57.16%)
Novel : 19059 (42.84%)

Filter reasons
----------------
Intrapriming               : 253463 (20.91%)
Monoexonic                 : 0 (0.00%)
RT switching               : 68536 (5.65%)
Low coverage/non-canonical : 890207 (73.44%)