Classifications
-------------
Input   : 2553510
Passed  : 873195 (34.20%)
Removed : 1680315 (65.80%)

Unique genes       : 55060
Unique transcripts : 739021

Classifications, by isoform
-------------
Full splice match       : 93568 (10.72%)
Incomplete splice match : 123940 (14.19%)
Novel in catalog        : 117979 (13.51%)
Novel not in catalog    : 470853 (53.92%)
Antisense               : 15521 (1.78%)
Genic intron            : 0 (0.00%)
Genic genomic           : 9875 (1.13%)
Intergenic              : 17178 (1.97%)
Other                   : 24281 (2.78%)

Classifications, by read
-------------
Full splice match       : NA
Incomplete splice match : NA
Novel in catalog        : NA
Novel not in catalog    : NA
Antisense               : NA
Genic intron            : NA
Genic genomic           : NA
Intergenic              : NA
Other                   : NA

Junctions
-----------
Known canonical     : 3100680 (81.00%)
Known non-canonical : 122 (0.00%)
Novel canonical     : 727030 (18.99%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 32275 (58.62%)
Novel : 22785 (41.38%)

Filter reasons
----------------
Intrapriming               : 384608 (22.89%)
Monoexonic                 : 0 (0.00%)
RT switching               : 91253 (5.43%)
Low coverage/non-canonical : 1204454 (71.68%)