Classifications
-------------
Input   : 3006313
Passed  : 979192 (32.57%)
Removed : 2027121 (67.43%)

Unique genes       : 34786
Unique transcripts : 552248

Classifications, by isoform
-------------
Full splice match       : 124294 (12.69%)
Incomplete splice match : 371265 (37.92%)
Novel in catalog        : 160762 (16.42%)
Novel not in catalog    : 294401 (30.07%)
Antisense               : 6315 (0.64%)
Genic intron            : 0 (0.00%)
Genic genomic           : 7847 (0.80%)
Intergenic              : 6764 (0.69%)
Other                   : 7544 (0.77%)

Classifications, by read
-------------
Full splice match       : 9461269 (34.97%)
Incomplete splice match : 13237663 (48.93%)
Novel in catalog        : 1735221 (6.41%)
Novel not in catalog    : 2321448 (8.58%)
Antisense               : 22472 (0.08%)
Genic intron            : 0 (0.00%)
Genic genomic           : 47074 (0.17%)
Intergenic              : 25182 (0.09%)
Other                   : 203325 (0.75%)

Junctions
-----------
Known canonical     : 4004551 (89.49%)
Known non-canonical : 165 (0.00%)
Novel canonical     : 470109 (10.51%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24786 (71.25%)
Novel : 10000 (28.75%)

Filter reasons
----------------
Intrapriming               : 1081267 (53.34%)
Monoexonic                 : 0 (0.00%)
RT switching               : 90192 (4.45%)
Low coverage/non-canonical : 855662 (42.21%)