Classifications
-------------
Input   : 2754795
Passed  : 933052 (33.87%)
Removed : 1821743 (66.13%)

Unique genes       : 33607
Unique transcripts : 537404

Classifications, by isoform
-------------
Full splice match       : 119773 (12.84%)
Incomplete splice match : 341553 (36.61%)
Novel in catalog        : 158781 (17.02%)
Novel not in catalog    : 284869 (30.53%)
Antisense               : 6283 (0.67%)
Genic intron            : 0 (0.00%)
Genic genomic           : 7289 (0.78%)
Intergenic              : 6324 (0.68%)
Other                   : 8180 (0.88%)

Classifications, by read
-------------
Full splice match       : 8343218 (33.50%)
Incomplete splice match : 12512705 (50.24%)
Novel in catalog        : 1595839 (6.41%)
Novel not in catalog    : 2133862 (8.57%)
Antisense               : 20111 (0.08%)
Genic intron            : 0 (0.00%)
Genic genomic           : 85152 (0.34%)
Intergenic              : 26234 (0.11%)
Other                   : 186661 (0.75%)

Junctions
-----------
Known canonical     : 3960712 (89.55%)
Known non-canonical : 163 (0.00%)
Novel canonical     : 461861 (10.44%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24114 (71.75%)
Novel : 9493 (28.25%)

Filter reasons
----------------
Intrapriming               : 994643 (54.60%)
Monoexonic                 : 0 (0.00%)
RT switching               : 84385 (4.63%)
Low coverage/non-canonical : 742715 (40.77%)