Classifications
-------------
Input   : 3173195
Passed  : 1061705 (33.46%)
Removed : 2111490 (66.54%)

Unique genes       : 36146
Unique transcripts : 622481

Classifications, by isoform
-------------
Full splice match       : 128329 (12.09%)
Incomplete splice match : 378463 (35.65%)
Novel in catalog        : 188224 (17.73%)
Novel not in catalog    : 332898 (31.36%)
Antisense               : 7482 (0.70%)
Genic intron            : 0 (0.00%)
Genic genomic           : 8441 (0.80%)
Intergenic              : 7614 (0.72%)
Other                   : 10254 (0.97%)

Classifications, by read
-------------
Full splice match       : 7871138 (31.95%)
Incomplete splice match : 12644866 (51.33%)
Novel in catalog        : 1710121 (6.94%)
Novel not in catalog    : 2111358 (8.57%)
Antisense               : 23462 (0.10%)
Genic intron            : 0 (0.00%)
Genic genomic           : 67830 (0.28%)
Intergenic              : 29040 (0.12%)
Other                   : 175913 (0.71%)

Junctions
-----------
Known canonical     : 4408928 (88.99%)
Known non-canonical : 166 (0.00%)
Novel canonical     : 545213 (11.00%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 25011 (69.19%)
Novel : 11135 (30.81%)

Filter reasons
----------------
Intrapriming               : 1166989 (55.27%)
Monoexonic                 : 0 (0.00%)
RT switching               : 95562 (4.53%)
Low coverage/non-canonical : 848939 (40.21%)