Classifications
-------------
Input   : 3461474
Passed  : 1051578 (30.38%)
Removed : 2409896 (69.62%)

Unique genes       : 39206
Unique transcripts : 596782

Classifications, by isoform
-------------
Full splice match       : 126436 (12.02%)
Incomplete splice match : 397710 (37.82%)
Novel in catalog        : 175541 (16.69%)
Novel not in catalog    : 315378 (29.99%)
Antisense               : 7550 (0.72%)
Genic intron            : 0 (0.00%)
Genic genomic           : 9139 (0.87%)
Intergenic              : 10274 (0.98%)
Other                   : 9550 (0.91%)

Classifications, by read
-------------
Full splice match       : 7422627 (30.62%)
Incomplete splice match : 12512720 (51.62%)
Novel in catalog        : 1779374 (7.34%)
Novel not in catalog    : 2186490 (9.02%)
Antisense               : 25004 (0.10%)
Genic intron            : 0 (0.00%)
Genic genomic           : 54694 (0.23%)
Intergenic              : 37899 (0.16%)
Other                   : 219656 (0.91%)

Junctions
-----------
Known canonical     : 4281417 (89.23%)
Known non-canonical : 144 (0.00%)
Novel canonical     : 516679 (10.77%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 25274 (64.46%)
Novel : 13932 (35.54%)

Filter reasons
----------------
Intrapriming               : 1259476 (52.26%)
Monoexonic                 : 0 (0.00%)
RT switching               : 105710 (4.39%)
Low coverage/non-canonical : 1044710 (43.35%)