Classifications
-------------
Input   : 2950100
Passed  : 1005489 (34.08%)
Removed : 1944611 (65.92%)

Unique genes       : 34001
Unique transcripts : 577898

Classifications, by isoform
-------------
Full splice match       : 122682 (12.20%)
Incomplete splice match : 372043 (37.00%)
Novel in catalog        : 175073 (17.41%)
Novel not in catalog    : 307015 (30.53%)
Antisense               : 6342 (0.63%)
Genic intron            : 0 (0.00%)
Genic genomic           : 7064 (0.70%)
Intergenic              : 6339 (0.63%)
Other                   : 8931 (0.89%)

Classifications, by read
-------------
Full splice match       : 8512892 (34.41%)
Incomplete splice match : 12164155 (49.17%)
Novel in catalog        : 1710708 (6.91%)
Novel not in catalog    : 2054426 (8.30%)
Antisense               : 18747 (0.08%)
Genic intron            : 0 (0.00%)
Genic genomic           : 89896 (0.36%)
Intergenic              : 23791 (0.10%)
Other                   : 166600 (0.67%)

Junctions
-----------
Known canonical     : 4203320 (89.37%)
Known non-canonical : 166 (0.00%)
Novel canonical     : 499779 (10.63%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24494 (72.04%)
Novel : 9507 (27.96%)

Filter reasons
----------------
Intrapriming               : 1069985 (55.02%)
Monoexonic                 : 0 (0.00%)
RT switching               : 86992 (4.47%)
Low coverage/non-canonical : 787634 (40.50%)