Classifications
-------------
Input   : 3127644
Passed  : 992758 (31.74%)
Removed : 2134886 (68.26%)

Unique genes       : 36275
Unique transcripts : 573459

Classifications, by isoform
-------------
Full splice match       : 123164 (12.41%)
Incomplete splice match : 363665 (36.63%)
Novel in catalog        : 166544 (16.78%)
Novel not in catalog    : 307230 (30.95%)
Antisense               : 7062 (0.71%)
Genic intron            : 0 (0.00%)
Genic genomic           : 8492 (0.86%)
Intergenic              : 7860 (0.79%)
Other                   : 8741 (0.88%)

Classifications, by read
-------------
Full splice match       : NA
Incomplete splice match : NA
Novel in catalog        : NA
Novel not in catalog    : NA
Antisense               : NA
Genic intron            : NA
Genic genomic           : NA
Intergenic              : NA
Other                   : NA

Junctions
-----------
Known canonical     : 4040468 (89.05%)
Known non-canonical : 157 (0.00%)
Novel canonical     : 496501 (10.94%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24878 (68.58%)
Novel : 11397 (31.42%)

Filter reasons
----------------
Intrapriming               : 1145915 (53.68%)
Monoexonic                 : 0 (0.00%)
RT switching               : 95224 (4.46%)
Low coverage/non-canonical : 893747 (41.86%)