Classifications
-------------
Input   : 1513325
Passed  : 577163 (38.14%)
Removed : 936162 (61.86%)

Unique genes       : 22245
Unique transcripts : 315084

Classifications, by isoform
-------------
Full splice match       : 124570 (21.58%)
Incomplete splice match : 191804 (33.23%)
Novel in catalog        : 142638 (24.71%)
Novel not in catalog    : 108332 (18.77%)
Antisense               : 1564 (0.27%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1130 (0.20%)
Intergenic              : 3495 (0.61%)
Other                   : 3630 (0.63%)

Classifications, by read
-------------
Full splice match       : 19722837 (77.82%)
Incomplete splice match : 3187249 (12.58%)
Novel in catalog        : 1616682 (6.38%)
Novel not in catalog    : 766038 (3.02%)
Antisense               : 7778 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 13239 (0.05%)
Intergenic              : 13963 (0.06%)
Other                   : 16410 (0.06%)

Junctions
-----------
Known canonical     : 4554748 (95.66%)
Known non-canonical : 379 (0.01%)
Novel canonical     : 206259 (4.33%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18003 (80.93%)
Novel : 4242 (19.07%)

Filter reasons
----------------
Intrapriming               : 499851 (53.39%)
Monoexonic                 : 0 (0.00%)
RT switching               : 18056 (1.93%)
Low coverage/non-canonical : 418255 (44.68%)