Classifications
-------------
Input   : 1009218
Passed  : 518142 (51.34%)
Removed : 491076 (48.66%)

Unique genes       : 24548
Unique transcripts : 245917

Classifications, by isoform
-------------
Full splice match       : 130882 (25.26%)
Incomplete splice match : 199495 (38.50%)
Novel in catalog        : 97355 (18.79%)
Novel not in catalog    : 81533 (15.74%)
Antisense               : 1793 (0.35%)
Genic intron            : 0 (0.00%)
Genic genomic           : 707 (0.14%)
Intergenic              : 2466 (0.48%)
Other                   : 3911 (0.75%)

Classifications, by read
-------------
Full splice match       : 25287857 (78.00%)
Incomplete splice match : 4801664 (14.81%)
Novel in catalog        : 1553222 (4.79%)
Novel not in catalog    : 714706 (2.20%)
Antisense               : 11035 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 7710 (0.02%)
Intergenic              : 20998 (0.06%)
Other                   : 21881 (0.07%)

Junctions
-----------
Known canonical     : 3806151 (96.04%)
Known non-canonical : 430 (0.01%)
Novel canonical     : 156374 (3.95%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21279 (86.68%)
Novel : 3269 (13.32%)

Filter reasons
----------------
Intrapriming               : 198761 (40.47%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9841 (2.00%)
Low coverage/non-canonical : 282474 (57.52%)