Classifications
-------------
Input   : 1477218
Passed  : 647055 (43.80%)
Removed : 830163 (56.20%)

Unique genes       : 24273
Unique transcripts : 289710

Classifications, by isoform
-------------
Full splice match       : 158846 (24.55%)
Incomplete splice match : 262249 (40.53%)
Novel in catalog        : 124312 (19.21%)
Novel not in catalog    : 93854 (14.50%)
Antisense               : 1410 (0.22%)
Genic intron            : 0 (0.00%)
Genic genomic           : 641 (0.10%)
Intergenic              : 1948 (0.30%)
Other                   : 3795 (0.59%)

Classifications, by read
-------------
Full splice match       : 28310062 (74.39%)
Incomplete splice match : 7272719 (19.11%)
Novel in catalog        : 1641975 (4.31%)
Novel not in catalog    : 788305 (2.07%)
Antisense               : 6506 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6797 (0.02%)
Intergenic              : 8971 (0.02%)
Other                   : 18638 (0.05%)

Junctions
-----------
Known canonical     : 4643565 (96.35%)
Known non-canonical : 481 (0.01%)
Novel canonical     : 175418 (3.64%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21583 (88.92%)
Novel : 2690 (11.08%)

Filter reasons
----------------
Intrapriming               : 386687 (46.58%)
Monoexonic                 : 0 (0.00%)
RT switching               : 12030 (1.45%)
Low coverage/non-canonical : 431446 (51.97%)