Classifications
-------------
Input   : 1137756
Passed  : 534383 (46.97%)
Removed : 603373 (53.03%)

Unique genes       : 24239
Unique transcripts : 244698

Classifications, by isoform
-------------
Full splice match       : 137383 (25.71%)
Incomplete splice match : 213048 (39.87%)
Novel in catalog        : 99744 (18.67%)
Novel not in catalog    : 76762 (14.36%)
Antisense               : 1493 (0.28%)
Genic intron            : 0 (0.00%)
Genic genomic           : 653 (0.12%)
Intergenic              : 1874 (0.35%)
Other                   : 3426 (0.64%)

Classifications, by read
-------------
Full splice match       : 22036836 (76.50%)
Incomplete splice match : 4868109 (16.90%)
Novel in catalog        : 1270340 (4.41%)
Novel not in catalog    : 590138 (2.05%)
Antisense               : 6725 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6280 (0.02%)
Intergenic              : 10766 (0.04%)
Other                   : 16580 (0.06%)

Junctions
-----------
Known canonical     : 3865228 (96.41%)
Known non-canonical : 435 (0.01%)
Novel canonical     : 143492 (3.58%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21587 (89.06%)
Novel : 2652 (10.94%)

Filter reasons
----------------
Intrapriming               : 266683 (44.20%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9950 (1.65%)
Low coverage/non-canonical : 326740 (54.15%)