Classifications
-------------
Input   : 1195240
Passed  : 579611 (48.49%)
Removed : 615629 (51.51%)

Unique genes       : 24579
Unique transcripts : 283039

Classifications, by isoform
-------------
Full splice match       : 145277 (25.06%)
Incomplete splice match : 213164 (36.78%)
Novel in catalog        : 118186 (20.39%)
Novel not in catalog    : 94898 (16.37%)
Antisense               : 1682 (0.29%)
Genic intron            : 0 (0.00%)
Genic genomic           : 708 (0.12%)
Intergenic              : 2111 (0.36%)
Other                   : 3585 (0.62%)

Classifications, by read
-------------
Full splice match       : 29373658 (79.18%)
Incomplete splice match : 5139315 (13.85%)
Novel in catalog        : 1740978 (4.69%)
Novel not in catalog    : 798521 (2.15%)
Antisense               : 9127 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 7836 (0.02%)
Intergenic              : 11959 (0.03%)
Other                   : 16684 (0.04%)

Junctions
-----------
Known canonical     : 4252377 (96.03%)
Known non-canonical : 448 (0.01%)
Novel canonical     : 175562 (3.96%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21610 (87.92%)
Novel : 2969 (12.08%)

Filter reasons
----------------
Intrapriming               : 274121 (44.53%)
Monoexonic                 : 0 (0.00%)
RT switching               : 11946 (1.94%)
Low coverage/non-canonical : 329562 (53.53%)