Classifications
-------------
Input   : 1210442
Passed  : 626161 (51.73%)
Removed : 584281 (48.27%)

Unique genes       : 24763
Unique transcripts : 299722

Classifications, by isoform
-------------
Full splice match       : 143351 (22.89%)
Incomplete splice match : 244958 (39.12%)
Novel in catalog        : 126877 (20.26%)
Novel not in catalog    : 102353 (16.35%)
Antisense               : 1812 (0.29%)
Genic intron            : 0 (0.00%)
Genic genomic           : 608 (0.10%)
Intergenic              : 2846 (0.45%)
Other                   : 3356 (0.54%)

Classifications, by read
-------------
Full splice match       : 23495281 (71.45%)
Incomplete splice match : 7025818 (21.37%)
Novel in catalog        : 1563755 (4.76%)
Novel not in catalog    : 753256 (2.29%)
Antisense               : 10863 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 4292 (0.01%)
Intergenic              : 17049 (0.05%)
Other                   : 13213 (0.04%)

Junctions
-----------
Known canonical     : 4418715 (95.75%)
Known non-canonical : 409 (0.01%)
Novel canonical     : 195481 (4.24%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21110 (85.25%)
Novel : 3653 (14.75%)

Filter reasons
----------------
Intrapriming               : 214239 (36.67%)
Monoexonic                 : 0 (0.00%)
RT switching               : 12027 (2.06%)
Low coverage/non-canonical : 358015 (61.27%)