Classifications
-------------
Input   : 938215
Passed  : 486267 (51.83%)
Removed : 451948 (48.17%)

Unique genes       : 21532
Unique transcripts : 237197

Classifications, by isoform
-------------
Full splice match       : 126850 (26.09%)
Incomplete splice match : 177334 (36.47%)
Novel in catalog        : 101120 (20.80%)
Novel not in catalog    : 75339 (15.49%)
Antisense               : 1097 (0.23%)
Genic intron            : 0 (0.00%)
Genic genomic           : 440 (0.09%)
Intergenic              : 1737 (0.36%)
Other                   : 2350 (0.48%)

Classifications, by read
-------------
Full splice match       : 22248339 (79.44%)
Incomplete splice match : 3670609 (13.11%)
Novel in catalog        : 1430700 (5.11%)
Novel not in catalog    : 622137 (2.22%)
Antisense               : 7734 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3717 (0.01%)
Intergenic              : 11963 (0.04%)
Other                   : 11691 (0.04%)

Junctions
-----------
Known canonical     : 3641392 (96.24%)
Known non-canonical : 405 (0.01%)
Novel canonical     : 142053 (3.75%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 19294 (89.61%)
Novel : 2238 (10.39%)

Filter reasons
----------------
Intrapriming               : 189696 (41.97%)
Monoexonic                 : 0 (0.00%)
RT switching               : 9413 (2.08%)
Low coverage/non-canonical : 252839 (55.94%)