Classifications
-------------
Input   : 1222662
Passed  : 555113 (45.40%)
Removed : 667549 (54.60%)

Unique genes       : 23819
Unique transcripts : 270841

Classifications, by isoform
-------------
Full splice match       : 138528 (24.95%)
Incomplete splice match : 204661 (36.87%)
Novel in catalog        : 114899 (20.70%)
Novel not in catalog    : 88389 (15.92%)
Antisense               : 2035 (0.37%)
Genic intron            : 0 (0.00%)
Genic genomic           : 704 (0.13%)
Intergenic              : 3041 (0.55%)
Other                   : 2856 (0.51%)

Classifications, by read
-------------
Full splice match       : 25409310 (78.18%)
Incomplete splice match : 4601390 (14.16%)
Novel in catalog        : 1632295 (5.02%)
Novel not in catalog    : 802837 (2.47%)
Antisense               : 16077 (0.05%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3695 (0.01%)
Intergenic              : 22017 (0.07%)
Other                   : 14836 (0.05%)

Junctions
-----------
Known canonical     : 3935344 (95.90%)
Known non-canonical : 446 (0.01%)
Novel canonical     : 167731 (4.09%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 20051 (84.18%)
Novel : 3768 (15.82%)

Filter reasons
----------------
Intrapriming               : 319598 (47.88%)
Monoexonic                 : 0 (0.00%)
RT switching               : 10345 (1.55%)
Low coverage/non-canonical : 337606 (50.57%)