Classifications
-------------
Input   : 1468735
Passed  : 639521 (43.54%)
Removed : 829214 (56.46%)

Unique genes       : 24252
Unique transcripts : 314128

Classifications, by isoform
-------------
Full splice match       : 149437 (23.37%)
Incomplete splice match : 236718 (37.01%)
Novel in catalog        : 138600 (21.67%)
Novel not in catalog    : 105766 (16.54%)
Antisense               : 2146 (0.34%)
Genic intron            : 0 (0.00%)
Genic genomic           : 752 (0.12%)
Intergenic              : 2989 (0.47%)
Other                   : 3113 (0.49%)

Classifications, by read
-------------
Full splice match       : 27802516 (74.58%)
Incomplete splice match : 6367439 (17.08%)
Novel in catalog        : 2094791 (5.62%)
Novel not in catalog    : 950965 (2.55%)
Antisense               : 20902 (0.06%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3752 (0.01%)
Intergenic              : 24663 (0.07%)
Other                   : 14729 (0.04%)

Junctions
-----------
Known canonical     : 4647938 (95.82%)
Known non-canonical : 518 (0.01%)
Novel canonical     : 201992 (4.16%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 20569 (84.81%)
Novel : 3683 (15.19%)

Filter reasons
----------------
Intrapriming               : 401568 (48.43%)
Monoexonic                 : 0 (0.00%)
RT switching               : 13364 (1.61%)
Low coverage/non-canonical : 414282 (49.96%)