Classifications
-------------
Input   : 1389039
Passed  : 656703 (47.28%)
Removed : 732336 (52.72%)

Unique genes       : 25110
Unique transcripts : 334954

Classifications, by isoform
-------------
Full splice match       : 151552 (23.08%)
Incomplete splice match : 232135 (35.35%)
Novel in catalog        : 143517 (21.85%)
Novel not in catalog    : 119532 (18.20%)
Antisense               : 2534 (0.39%)
Genic intron            : 0 (0.00%)
Genic genomic           : 819 (0.12%)
Intergenic              : 3212 (0.49%)
Other                   : 3402 (0.52%)

Classifications, by read
-------------
Full splice match       : 30866786 (76.23%)
Incomplete splice match : 6264229 (15.47%)
Novel in catalog        : 2199288 (5.43%)
Novel not in catalog    : 1091364 (2.70%)
Antisense               : 23964 (0.06%)
Genic intron            : 0 (0.00%)
Genic genomic           : 4140 (0.01%)
Intergenic              : 24894 (0.06%)
Other                   : 15477 (0.04%)

Junctions
-----------
Known canonical     : 4701116 (95.37%)
Known non-canonical : 519 (0.01%)
Novel canonical     : 227809 (4.62%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21025 (83.73%)
Novel : 4085 (16.27%)

Filter reasons
----------------
Intrapriming               : 334207 (45.64%)
Monoexonic                 : 0 (0.00%)
RT switching               : 13913 (1.90%)
Low coverage/non-canonical : 384216 (52.46%)