Classifications
-------------
Input   : 1117567
Passed  : 552028 (49.40%)
Removed : 565539 (50.60%)

Unique genes       : 22990
Unique transcripts : 267919

Classifications, by isoform
-------------
Full splice match       : 139688 (25.30%)
Incomplete splice match : 201592 (36.52%)
Novel in catalog        : 111363 (20.17%)
Novel not in catalog    : 91483 (16.57%)
Antisense               : 1822 (0.33%)
Genic intron            : 0 (0.00%)
Genic genomic           : 623 (0.11%)
Intergenic              : 2597 (0.47%)
Other                   : 2860 (0.52%)

Classifications, by read
-------------
Full splice match       : 27444283 (78.15%)
Incomplete splice match : 4880431 (13.90%)
Novel in catalog        : 1874641 (5.34%)
Novel not in catalog    : 856950 (2.44%)
Antisense               : 18192 (0.05%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3269 (0.01%)
Intergenic              : 21709 (0.06%)
Other                   : 16361 (0.05%)

Junctions
-----------
Known canonical     : 4097603 (95.95%)
Known non-canonical : 491 (0.01%)
Novel canonical     : 172624 (4.04%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 19776 (86.02%)
Novel : 3214 (13.98%)

Filter reasons
----------------
Intrapriming               : 252699 (44.68%)
Monoexonic                 : 0 (0.00%)
RT switching               : 10452 (1.85%)
Low coverage/non-canonical : 302388 (53.47%)