Classifications
-------------
Input   : 2637748
Passed  : 856411 (32.47%)
Removed : 1781337 (67.53%)

Unique genes       : 48635
Unique transcripts : 647723

Classifications, by isoform
-------------
Full splice match       : 125681 (14.68%)
Incomplete splice match : 158576 (18.52%)
Novel in catalog        : 153325 (17.90%)
Novel not in catalog    : 369421 (43.14%)
Antisense               : 13360 (1.56%)
Genic intron            : 0 (0.00%)
Genic genomic           : 8089 (0.94%)
Intergenic              : 19065 (2.23%)
Other                   : 8894 (1.04%)

Classifications, by read
-------------
Full splice match       : 42614380 (74.51%)
Incomplete splice match : 3524297 (6.16%)
Novel in catalog        : 1755933 (3.07%)
Novel not in catalog    : 7672531 (13.41%)
Antisense               : 51287 (0.09%)
Genic intron            : 0 (0.00%)
Genic genomic           : 540799 (0.95%)
Intergenic              : 73604 (0.13%)
Other                   : 963595 (1.68%)

Junctions
-----------
Known canonical     : 4157847 (87.10%)
Known non-canonical : 188 (0.00%)
Novel canonical     : 615524 (12.89%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24843 (51.08%)
Novel : 23792 (48.92%)

Filter reasons
----------------
Intrapriming               : 783828 (44.00%)
Monoexonic                 : 0 (0.00%)
RT switching               : 83763 (4.70%)
Low coverage/non-canonical : 913746 (51.30%)