Classifications
-------------
Input   : 275827
Passed  : 147946 (53.64%)
Removed : 127881 (46.36%)

Unique genes       : 15471
Unique transcripts : 68686

Classifications, by isoform
-------------
Full splice match       : 54237 (36.66%)
Incomplete splice match : 61820 (41.79%)
Novel in catalog        : 20075 (13.57%)
Novel not in catalog    : 11013 (7.44%)
Antisense               : 140 (0.09%)
Genic intron            : 0 (0.00%)
Genic genomic           : 112 (0.08%)
Intergenic              : 242 (0.16%)
Other                   : 307 (0.21%)

Classifications, by read
-------------
Full splice match       : 3061179 (81.88%)
Incomplete splice match : 489138 (13.08%)
Novel in catalog        : 120010 (3.21%)
Novel not in catalog    : 65113 (1.74%)
Antisense               : 479 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 914 (0.02%)
Intergenic              : 740 (0.02%)
Other                   : 1032 (0.03%)

Junctions
-----------
Known canonical     : 1057403 (98.19%)
Known non-canonical : 145 (0.01%)
Novel canonical     : 19348 (1.80%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 15124 (97.76%)
Novel : 347 (2.24%)

Filter reasons
----------------
Intrapriming               : 53443 (41.79%)
Monoexonic                 : 0 (0.00%)
RT switching               : 2795 (2.19%)
Low coverage/non-canonical : 71643 (56.02%)