Classifications
-------------
Input   : 277858
Passed  : 148600 (53.48%)
Removed : 129258 (46.52%)

Unique genes       : 15575
Unique transcripts : 69317

Classifications, by isoform
-------------
Full splice match       : 54226 (36.49%)
Incomplete splice match : 62168 (41.84%)
Novel in catalog        : 20203 (13.60%)
Novel not in catalog    : 11230 (7.56%)
Antisense               : 150 (0.10%)
Genic intron            : 0 (0.00%)
Genic genomic           : 105 (0.07%)
Intergenic              : 223 (0.15%)
Other                   : 295 (0.20%)

Classifications, by read
-------------
Full splice match       : 3041757 (81.49%)
Incomplete splice match : 500729 (13.41%)
Novel in catalog        : 122015 (3.27%)
Novel not in catalog    : 65059 (1.74%)
Antisense               : 540 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 901 (0.02%)
Intergenic              : 693 (0.02%)
Other                   : 1167 (0.03%)

Junctions
-----------
Known canonical     : 1059118 (98.17%)
Known non-canonical : 141 (0.01%)
Novel canonical     : 19585 (1.82%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 15234 (97.81%)
Novel : 341 (2.19%)

Filter reasons
----------------
Intrapriming               : 54024 (41.80%)
Monoexonic                 : 0 (0.00%)
RT switching               : 2859 (2.21%)
Low coverage/non-canonical : 72375 (55.99%)