Classifications
-------------
Input   : 272862
Passed  : 142647 (52.28%)
Removed : 130215 (47.72%)

Unique genes       : 15484
Unique transcripts : 66838

Classifications, by isoform
-------------
Full splice match       : 52953 (37.12%)
Incomplete splice match : 60187 (42.19%)
Novel in catalog        : 17979 (12.60%)
Novel not in catalog    : 10731 (7.52%)
Antisense               : 139 (0.10%)
Genic intron            : 0 (0.00%)
Genic genomic           : 124 (0.09%)
Intergenic              : 248 (0.17%)
Other                   : 286 (0.20%)

Classifications, by read
-------------
Full splice match       : 3159964 (82.45%)
Incomplete splice match : 497453 (12.98%)
Novel in catalog        : 108065 (2.82%)
Novel not in catalog    : 63762 (1.66%)
Antisense               : 520 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1161 (0.03%)
Intergenic              : 730 (0.02%)
Other                   : 1046 (0.03%)

Junctions
-----------
Known canonical     : 969086 (98.12%)
Known non-canonical : 126 (0.01%)
Novel canonical     : 18445 (1.87%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 15124 (97.68%)
Novel : 360 (2.32%)

Filter reasons
----------------
Intrapriming               : 55777 (42.83%)
Monoexonic                 : 0 (0.00%)
RT switching               : 2738 (2.10%)
Low coverage/non-canonical : 71700 (55.06%)