Classifications
-------------
Input   : 303342
Passed  : 156463 (51.58%)
Removed : 146879 (48.42%)

Unique genes       : 15893
Unique transcripts : 71835

Classifications, by isoform
-------------
Full splice match       : 56554 (36.15%)
Incomplete splice match : 66602 (42.57%)
Novel in catalog        : 20495 (13.10%)
Novel not in catalog    : 11868 (7.59%)
Antisense               : 179 (0.11%)
Genic intron            : 0 (0.00%)
Genic genomic           : 130 (0.08%)
Intergenic              : 307 (0.20%)
Other                   : 328 (0.21%)

Classifications, by read
-------------
Full splice match       : 3390803 (81.21%)
Incomplete splice match : 583264 (13.97%)
Novel in catalog        : 126268 (3.02%)
Novel not in catalog    : 71064 (1.70%)
Antisense               : 665 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1154 (0.03%)
Intergenic              : 926 (0.02%)
Other                   : 1376 (0.03%)

Junctions
-----------
Known canonical     : 1076021 (98.09%)
Known non-canonical : 147 (0.01%)
Novel canonical     : 20838 (1.90%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 15447 (97.19%)
Novel : 446 (2.81%)

Filter reasons
----------------
Intrapriming               : 62479 (42.54%)
Monoexonic                 : 0 (0.00%)
RT switching               : 2883 (1.96%)
Low coverage/non-canonical : 81517 (55.50%)