Classifications
-------------
Input   : 849686
Passed  : 343142 (40.38%)
Removed : 506544 (59.62%)

Unique genes       : 20272
Unique transcripts : 158791

Classifications, by isoform
-------------
Full splice match       : 100372 (29.25%)
Incomplete splice match : 137602 (40.10%)
Novel in catalog        : 56624 (16.50%)
Novel not in catalog    : 45435 (13.24%)
Antisense               : 485 (0.14%)
Genic intron            : 0 (0.00%)
Genic genomic           : 536 (0.16%)
Intergenic              : 1053 (0.31%)
Other                   : 1035 (0.30%)

Classifications, by read
-------------
Full splice match       : 10167958 (80.35%)
Incomplete splice match : 1694680 (13.39%)
Novel in catalog        : 465911 (3.68%)
Novel not in catalog    : 313048 (2.47%)
Antisense               : 1765 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3653 (0.03%)
Intergenic              : 3730 (0.03%)
Other                   : 4528 (0.04%)

Junctions
-----------
Known canonical     : 2475201 (97.06%)
Known non-canonical : 233 (0.01%)
Novel canonical     : 74760 (2.93%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18903 (93.25%)
Novel : 1369 (6.75%)

Filter reasons
----------------
Intrapriming               : 259999 (51.33%)
Monoexonic                 : 0 (0.00%)
RT switching               : 7940 (1.57%)
Low coverage/non-canonical : 238605 (47.10%)