Classifications
-------------
Input   : 152884
Passed  : 89524 (58.56%)
Removed : 63360 (41.44%)

Unique genes       : 13042
Unique transcripts : 44495

Classifications, by isoform
-------------
Full splice match       : 36914 (41.23%)
Incomplete splice match : 35986 (40.20%)
Novel in catalog        : 10456 (11.68%)
Novel not in catalog    : 5867 (6.55%)
Antisense               : 41 (0.05%)
Genic intron            : 0 (0.00%)
Genic genomic           : 66 (0.07%)
Intergenic              : 88 (0.10%)
Other                   : 106 (0.12%)

Classifications, by read
-------------
Full splice match       : 1543524 (83.54%)
Incomplete splice match : 214058 (11.58%)
Novel in catalog        : 54970 (2.97%)
Novel not in catalog    : 34099 (1.85%)
Antisense               : 114 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 354 (0.02%)
Intergenic              : 232 (0.01%)
Other                   : 381 (0.02%)

Junctions
-----------
Known canonical     : 660093 (98.55%)
Known non-canonical : 93 (0.01%)
Novel canonical     : 9593 (1.43%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 12921 (99.07%)
Novel : 121 (0.93%)

Filter reasons
----------------
Intrapriming               : 28302 (44.67%)
Monoexonic                 : 0 (0.00%)
RT switching               : 1871 (2.95%)
Low coverage/non-canonical : 33187 (52.38%)