Classifications
-------------
Input   : 560280
Passed  : 261451 (46.66%)
Removed : 298829 (53.34%)

Unique genes       : 19060
Unique transcripts : 120242

Classifications, by isoform
-------------
Full splice match       : 82818 (31.68%)
Incomplete splice match : 106787 (40.84%)
Novel in catalog        : 42598 (16.29%)
Novel not in catalog    : 26940 (10.30%)
Antisense               : 379 (0.14%)
Genic intron            : 0 (0.00%)
Genic genomic           : 310 (0.12%)
Intergenic              : 761 (0.29%)
Other                   : 858 (0.33%)

Classifications, by read
-------------
Full splice match       : 7003757 (80.68%)
Incomplete splice match : 1184985 (13.65%)
Novel in catalog        : 309489 (3.57%)
Novel not in catalog    : 173504 (2.00%)
Antisense               : 1359 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2327 (0.03%)
Intergenic              : 2489 (0.03%)
Other                   : 3180 (0.04%)

Junctions
-----------
Known canonical     : 1862137 (97.47%)
Known non-canonical : 208 (0.01%)
Novel canonical     : 48194 (2.52%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18019 (94.54%)
Novel : 1041 (5.46%)

Filter reasons
----------------
Intrapriming               : 141039 (47.20%)
Monoexonic                 : 0 (0.00%)
RT switching               : 5140 (1.72%)
Low coverage/non-canonical : 152650 (51.08%)