Classifications
-------------
Input   : 563567
Passed  : 262869 (46.64%)
Removed : 300698 (53.36%)

Unique genes       : 19107
Unique transcripts : 120458

Classifications, by isoform
-------------
Full splice match       : 82985 (31.57%)
Incomplete splice match : 108121 (41.13%)
Novel in catalog        : 42383 (16.12%)
Novel not in catalog    : 27073 (10.30%)
Antisense               : 407 (0.15%)
Genic intron            : 0 (0.00%)
Genic genomic           : 306 (0.12%)
Intergenic              : 784 (0.30%)
Other                   : 810 (0.31%)

Classifications, by read
-------------
Full splice match       : 6959212 (80.30%)
Incomplete splice match : 1213057 (14.00%)
Novel in catalog        : 306859 (3.54%)
Novel not in catalog    : 177906 (2.05%)
Antisense               : 1528 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2373 (0.03%)
Intergenic              : 2477 (0.03%)
Other                   : 3617 (0.04%)

Junctions
-----------
Known canonical     : 1864385 (97.47%)
Known non-canonical : 205 (0.01%)
Novel canonical     : 48177 (2.52%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18038 (94.41%)
Novel : 1069 (5.59%)

Filter reasons
----------------
Intrapriming               : 142262 (47.31%)
Monoexonic                 : 0 (0.00%)
RT switching               : 5217 (1.73%)
Low coverage/non-canonical : 153219 (50.95%)