Classifications
-------------
Input   : 555837
Passed  : 252553 (45.44%)
Removed : 303284 (54.56%)

Unique genes       : 19163
Unique transcripts : 115523

Classifications, by isoform
-------------
Full splice match       : 81176 (32.14%)
Incomplete splice match : 104871 (41.52%)
Novel in catalog        : 38490 (15.24%)
Novel not in catalog    : 25658 (10.16%)
Antisense               : 421 (0.17%)
Genic intron            : 0 (0.00%)
Genic genomic           : 320 (0.13%)
Intergenic              : 824 (0.33%)
Other                   : 793 (0.31%)

Classifications, by read
-------------
Full splice match       : 7241279 (81.48%)
Incomplete splice match : 1192112 (13.41%)
Novel in catalog        : 282200 (3.18%)
Novel not in catalog    : 161504 (1.82%)
Antisense               : 1665 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2955 (0.03%)
Intergenic              : 2502 (0.03%)
Other                   : 3118 (0.04%)

Junctions
-----------
Known canonical     : 1712333 (97.40%)
Known non-canonical : 192 (0.01%)
Novel canonical     : 45429 (2.58%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18042 (94.15%)
Novel : 1121 (5.85%)

Filter reasons
----------------
Intrapriming               : 145886 (48.10%)
Monoexonic                 : 0 (0.00%)
RT switching               : 4602 (1.52%)
Low coverage/non-canonical : 152796 (50.38%)