Classifications
-------------
Input   : 621623
Passed  : 279476 (44.96%)
Removed : 342147 (55.04%)

Unique genes       : 19781
Unique transcripts : 128306

Classifications, by isoform
-------------
Full splice match       : 87218 (31.21%)
Incomplete splice match : 114742 (41.06%)
Novel in catalog        : 44956 (16.09%)
Novel not in catalog    : 29868 (10.69%)
Antisense               : 475 (0.17%)
Genic intron            : 0 (0.00%)
Genic genomic           : 365 (0.13%)
Intergenic              : 987 (0.35%)
Other                   : 865 (0.31%)

Classifications, by read
-------------
Full splice match       : 7820258 (80.42%)
Incomplete splice match : 1361751 (14.00%)
Novel in catalog        : 332690 (3.42%)
Novel not in catalog    : 198086 (2.04%)
Antisense               : 1720 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2993 (0.03%)
Intergenic              : 3023 (0.03%)
Other                   : 3552 (0.04%)

Junctions
-----------
Known canonical     : 1933331 (97.31%)
Known non-canonical : 206 (0.01%)
Novel canonical     : 53327 (2.68%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18454 (93.29%)
Novel : 1327 (6.71%)

Filter reasons
----------------
Intrapriming               : 164897 (48.19%)
Monoexonic                 : 0 (0.00%)
RT switching               : 5342 (1.56%)
Low coverage/non-canonical : 171908 (50.24%)