Classifications
-------------
Input   : 618874
Passed  : 276217 (44.63%)
Removed : 342657 (55.37%)

Unique genes       : 19823
Unique transcripts : 126373

Classifications, by isoform
-------------
Full splice match       : 85882 (31.09%)
Incomplete splice match : 114372 (41.41%)
Novel in catalog        : 43777 (15.85%)
Novel not in catalog    : 29434 (10.66%)
Antisense               : 504 (0.18%)
Genic intron            : 0 (0.00%)
Genic genomic           : 350 (0.13%)
Intergenic              : 1039 (0.38%)
Other                   : 859 (0.31%)

Classifications, by read
-------------
Full splice match       : 7745975 (80.14%)
Incomplete splice match : 1396281 (14.45%)
Novel in catalog        : 323488 (3.35%)
Novel not in catalog    : 187724 (1.94%)
Antisense               : 1837 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2947 (0.03%)
Intergenic              : 3089 (0.03%)
Other                   : 3752 (0.04%)

Junctions
-----------
Known canonical     : 1891262 (97.26%)
Known non-canonical : 201 (0.01%)
Novel canonical     : 52988 (2.73%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 18412 (92.88%)
Novel : 1411 (7.12%)

Filter reasons
----------------
Intrapriming               : 165087 (48.18%)
Monoexonic                 : 0 (0.00%)
RT switching               : 5245 (1.53%)
Low coverage/non-canonical : 172325 (50.29%)