Classifications
-------------
Input   : 490068
Passed  : 235281 (48.01%)
Removed : 254787 (51.99%)

Unique genes       : 18286
Unique transcripts : 108345

Classifications, by isoform
-------------
Full splice match       : 76019 (32.31%)
Incomplete splice match : 97214 (41.32%)
Novel in catalog        : 37069 (15.76%)
Novel not in catalog    : 23070 (9.81%)
Antisense               : 344 (0.15%)
Genic intron            : 0 (0.00%)
Genic genomic           : 247 (0.10%)
Intergenic              : 639 (0.27%)
Other                   : 679 (0.29%)

Classifications, by read
-------------
Full splice match       : 5903153 (80.41%)
Incomplete splice match : 1016305 (13.84%)
Novel in catalog        : 262286 (3.57%)
Novel not in catalog    : 151252 (2.06%)
Antisense               : 1221 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1989 (0.03%)
Intergenic              : 1937 (0.03%)
Other                   : 2821 (0.04%)

Junctions
-----------
Known canonical     : 1669599 (97.59%)
Known non-canonical : 182 (0.01%)
Novel canonical     : 41027 (2.40%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 17382 (95.06%)
Novel : 904 (4.94%)

Filter reasons
----------------
Intrapriming               : 118331 (46.44%)
Monoexonic                 : 0 (0.00%)
RT switching               : 4203 (1.65%)
Low coverage/non-canonical : 132253 (51.91%)