Classifications
-------------
Input   : 453872
Passed  : 221515 (48.81%)
Removed : 232357 (51.19%)

Unique genes       : 17824
Unique transcripts : 101472

Classifications, by isoform
-------------
Full splice match       : 72904 (32.91%)
Incomplete splice match : 92191 (41.62%)
Novel in catalog        : 34022 (15.36%)
Novel not in catalog    : 20771 (9.38%)
Antisense               : 274 (0.12%)
Genic intron            : 0 (0.00%)
Genic genomic           : 245 (0.11%)
Intergenic              : 516 (0.23%)
Other                   : 592 (0.27%)

Classifications, by read
-------------
Full splice match       : 5409523 (80.59%)
Incomplete splice match : 934147 (13.92%)
Novel in catalog        : 233631 (3.48%)
Novel not in catalog    : 128414 (1.91%)
Antisense               : 1076 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1757 (0.03%)
Intergenic              : 1619 (0.02%)
Other                   : 2306 (0.03%)

Junctions
-----------
Known canonical     : 1572671 (97.71%)
Known non-canonical : 165 (0.01%)
Novel canonical     : 36729 (2.28%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 17099 (95.93%)
Novel : 725 (4.07%)

Filter reasons
----------------
Intrapriming               : 106378 (45.78%)
Monoexonic                 : 0 (0.00%)
RT switching               : 3987 (1.72%)
Low coverage/non-canonical : 121992 (52.50%)