Classifications
-------------
Input   : 447420
Passed  : 212706 (47.54%)
Removed : 234714 (52.46%)

Unique genes       : 17858
Unique transcripts : 97866

Classifications, by isoform
-------------
Full splice match       : 71046 (33.40%)
Incomplete splice match : 88982 (41.83%)
Novel in catalog        : 31028 (14.59%)
Novel not in catalog    : 19978 (9.39%)
Antisense               : 318 (0.15%)
Genic intron            : 0 (0.00%)
Genic genomic           : 237 (0.11%)
Intergenic              : 532 (0.25%)
Other                   : 585 (0.28%)

Classifications, by read
-------------
Full splice match       : 5616935 (81.64%)
Incomplete splice match : 921403 (13.39%)
Novel in catalog        : 210424 (3.06%)
Novel not in catalog    : 123598 (1.80%)
Antisense               : 1190 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2163 (0.03%)
Intergenic              : 1699 (0.02%)
Other                   : 2570 (0.04%)

Junctions
-----------
Known canonical     : 1438918 (97.62%)
Known non-canonical : 162 (0.01%)
Novel canonical     : 34938 (2.37%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 17087 (95.68%)
Novel : 771 (4.32%)

Filter reasons
----------------
Intrapriming               : 109352 (46.59%)
Monoexonic                 : 0 (0.00%)
RT switching               : 3938 (1.68%)
Low coverage/non-canonical : 121424 (51.73%)